; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G087200 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G087200
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionF-box protein CPR30-like
Genome locationchrH04:25808337..25812984
RNA-Seq ExpressionChy4G087200
SyntenyChy4G087200
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR006527 - F-box associated domain, type 1
IPR017451 - F-box associated interaction domain
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651058.1 hypothetical protein Csa_002465 [Cucumis sativus]1.02e-9339.18Show/hide
Query:  AVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVWRDVGGQEFGGMY-------------
        A GLNPQTSQNLA QNIMAPIQRTTKKYPGIRC K VKTG SQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVWRDVGGQEFGG+              
Subjt:  AVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVWRDVGGQEFGGMY-------------

Query:  ------------------------------------------------------------------------------------------CAILV-----
                                                                                                  C ++V     
Subjt:  ------------------------------------------------------------------------------------------CAILV-----

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------VKVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGA
                                                                           KVVRIVSCRGQ+E RMRVEIYDLS+DKWREIGA
Subjt:  ------------------------------------------------------------------VKVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGA

Query:  PDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRVLNKSIVLFVYPFESNETNI--------------
        P+IC SA+CT TFDMYHEGIFYWWGYGEP ISE DHIITFDM EEIFGKVSLPESYDDKKHKI LRVLNKSIVLFVYP++SNETNI              
Subjt:  PDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRVLNKSIVLFVYPFESNETNI--------------

Query:  DIWEMEKDEFGVV
        DIWEMEKDEFGVV
Subjt:  DIWEMEKDEFGVV

XP_031737470.1 F-box protein CPR1-like isoform X1 [Cucumis sativus]7.21e-7380.14Show/hide
Query:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV
        KVVRIVSCRGQ+E R+RVEIYDLSKDKWREI AP  C SAS T TFDMYHEGIFYWWGYGEP ISE DHIITFDM EEIFGKVSLPESYDDKKHKI LRV
Subjt:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV

Query:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV
        LNKSIVLFVYP++SNETNI              DIWEMEKDEFGVV
Subjt:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV

XP_031737485.1 F-box protein CPR1-like [Cucumis sativus]4.89e-8090.91Show/hide
Query:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV
        KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDIC SAS T TFDMYHEGIFYWWGYGEPMI EADHIITFDM E IF +VSL ESYDDKKHKISLRV
Subjt:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV

Query:  LNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        LNKSIVLF+YPFESNETNIDIWEME DE+GVV
Subjt:  LNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

XP_031738543.1 F-box protein CPR1-like [Cucumis sativus]7.58e-7681.51Show/hide
Query:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV
        KVVRIVSCRGQ+E RMRVEIYDLS+DKWREIGAP+IC SA+CT TFDMYHEGIFYWWGYGEP ISE DHIITFDM EEIFGKVSLPESYDDKKHKI LRV
Subjt:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV

Query:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV
        LNKSIVLFVYP++SNETNI              DIWEMEKDEFGVV
Subjt:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV

XP_031738688.1 F-box protein CPR1-like isoform X1 [Cucumis sativus]1.71e-7178.77Show/hide
Query:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV
        KVVRIVSCRGQ+E R+RVEIYDLSKDKWREI APD C  ASC STFDMYHEGIFYWWG GEP ISE DHIITFDM EEIFGKVSLPES+D+KKHKI LRV
Subjt:  KVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLRV

Query:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV
        LNKSIVLFVYP++SNETNI              DIWEMEKDEFGVV
Subjt:  LNKSIVLFVYPFESNETNI--------------DIWEMEKDEFGVV

TrEMBL top hitse value%identityAlignment
A0A1S3B6F9 F-box protein CPR30-like6.8e-5075Show/hide
Query:  KVVRIVSCRGQ--AEF--RMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI
        KVVRIVSCRG   A F    RVEIYDLSK KWREI AP  C  A CT TFDMYHEGIFY+WGYGE  +S ADHIITFDM +E+ GK+S+PESYDDKKHK 
Subjt:  KVVRIVSCRGQ--AEF--RMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI

Query:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        SL VLN SIVLFVYPFESNE NIDIWEM+KDE  VV
Subjt:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

A0A1S4DUI5 F-box/kelch-repeat protein At3g23880-like7.5e-4971.32Show/hide
Query:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI
        KVVRIVS RG +   M    RVEIYDLSKDKWREI AP  C  A+CT  FDMYHEG FY+WG+GE  I EADHI+TFDM +E+F K+S+PESYDDKKHK 
Subjt:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI

Query:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        SL VLN+S+VLFVYPFESNE NIDIWEMEK+E  VV
Subjt:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

A0A5A7TQ58 F-box protein CPR30-like6.8e-5075Show/hide
Query:  KVVRIVSCRGQ--AEF--RMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI
        KVVRIVSCRG   A F    RVEIYDLSK KWREI AP  C  A CT TFDMYHEGIFY+WGYGE  +S ADHIITFDM +E+ GK+S+PESYDDKKHK 
Subjt:  KVVRIVSCRGQ--AEF--RMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI

Query:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        SL VLN SIVLFVYPFESNE NIDIWEM+KDE  VV
Subjt:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

A0A5A7TRC3 F-box protein CPR30-like7.5e-4971.32Show/hide
Query:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI
        KVVRIVS RG +   M    RVEIYDLSKDKWREI AP  C  A+CT  FDMYHEG FY+WG+GE  I EADHI+TFDM +E+F K+S+PESYDDKKHK 
Subjt:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKI

Query:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        SL VLN+S+VLFVYPFESNE NIDIWEMEK+E  VV
Subjt:  SLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

A0A5D3DPH7 F-box protein CPR30-like8.3e-4871.22Show/hide
Query:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEA---DHIITFDMREEIFGKVSLPESYDDKK
        KVVR+V   G +   M    RVEIYDLSKDKWREIGAP     AS T +FDMYHEG FYWWG GEP I+EA   +HIITFDM EE+FGK+S+P+SYDDKK
Subjt:  KVVRIVSCRGQAEFRM----RVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEA---DHIITFDMREEIFGKVSLPESYDDKK

Query:  HKISLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV
        HK SL VLN+SIVLFVYPFESNETNIDIWEM+KDE  VV
Subjt:  HKISLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVV

SwissProt top hitse value%identityAlignment
P42813 Ribonuclease 13.2e-0425.81Show/hide
Query:  VKPHRFEAHDLFIESLVSVEGGRDAVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTC
        +  H +    L ++   ++ G     G+NP   ++ + ++I   I+ +    P + C  +  +GNSQL ++ LC+++ G+ LI+CP F    C
Subjt:  VKPHRFEAHDLFIESLVSVEGGRDAVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTC

Arabidopsis top hitse value%identityAlignment
AT2G02990.1 ribonuclease 12.3e-0525.81Show/hide
Query:  VKPHRFEAHDLFIESLVSVEGGRDAVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTC
        +  H +    L ++   ++ G     G+NP   ++ + ++I   I+ +    P + C  +  +GNSQL ++ LC+++ G+ LI+CP F    C
Subjt:  VKPHRFEAHDLFIESLVSVEGGRDAVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGATLIDCPTFVSNTC

AT3G23260.1 F-box and associated interaction domains-containing protein8.6e-0525.81Show/hide
Query:  KVVRIVS-CRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLR
        KV+R++S    Q +F++  EIYD + D WR  GA       S      +  +G  YW            + ++FD   E F  +SLP+ +      +S+ 
Subjt:  KVVRIVS-CRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFDMREEIFGKVSLPESYDDKKHKISLR

Query:  VLNKSIVLF-VYPFESNETNIDIW
        V  + + LF  Y + +   ++++W
Subjt:  VLNKSIVLF-VYPFESNETNIDIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCGAGTGAAGGACACGTGATTATGTATAACACGAAAACTCAACTATTCAAAAAGCTTCCAATAGAAGGGGATGTAACTTATGTAAAACCTCACAGATTCGAAGC
TCATGATCTTTTCATTGAGAGTTTGGTATCTGTGGAAGGGGGAAGAGATGCCGTCGGGCTCAACCCTCAAACCTCCCAAAACCTTGCAACCCAAAACATCATGGCCCCTA
TTCAAAGGACAACAAAAAAGTATCCTGGCATCCGCTGCTACAAAAAAGTTAAAACTGGCAATTCGCAGTTGAATGAAATTGTACTGTGTTTGGAAAAAGATGGTGCTACC
CTCATCGACTGCCCTACGTTTGTTAGTAACACTTGTGCAAAATCATTTGTGTGGAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAGTTGTCAA
AGTTGTTAGAATTGTGAGTTGTCGAGGACAAGCAGAATTCAGGATGAGAGTGGAAATTTATGATTTGAGCAAAGATAAATGGAGAGAAATTGGAGCTCCTGATATTTGTC
GCAGTGCATCATGCACATCTACATTTGATATGTACCACGAAGGAATATTTTATTGGTGGGGATACGGTGAACCAATGATTTCCGAAGCCGACCATATTATAACATTTGAC
ATGAGGGAAGAGATTTTTGGTAAAGTTTCATTACCGGAGAGCTATGATGACAAAAAACATAAAATAAGTTTAAGGGTTTTGAATAAGTCCATTGTTCTTTTTGTTTATCC
ATTTGAAAGTAATGAGACAAATATTGACATTTGGGAGATGGAGAAGGATGAATTTGGTGTGGTCGAAGCTATTGACGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCGAGTGAAGGACACGTGATTATGTATAACACGAAAACTCAACTATTCAAAAAGCTTCCAATAGAAGGGGATGTAACTTATGTAAAACCTCACAGATTCGAAGC
TCATGATCTTTTCATTGAGAGTTTGGTATCTGTGGAAGGGGGAAGAGATGCCGTCGGGCTCAACCCTCAAACCTCCCAAAACCTTGCAACCCAAAACATCATGGCCCCTA
TTCAAAGGACAACAAAAAAGTATCCTGGCATCCGCTGCTACAAAAAAGTTAAAACTGGCAATTCGCAGTTGAATGAAATTGTACTGTGTTTGGAAAAAGATGGTGCTACC
CTCATCGACTGCCCTACGTTTGTTAGTAACACTTGTGCAAAATCATTTGTGTGGAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAGTTGTCAA
AGTTGTTAGAATTGTGAGTTGTCGAGGACAAGCAGAATTCAGGATGAGAGTGGAAATTTATGATTTGAGCAAAGATAAATGGAGAGAAATTGGAGCTCCTGATATTTGTC
GCAGTGCATCATGCACATCTACATTTGATATGTACCACGAAGGAATATTTTATTGGTGGGGATACGGTGAACCAATGATTTCCGAAGCCGACCATATTATAACATTTGAC
ATGAGGGAAGAGATTTTTGGTAAAGTTTCATTACCGGAGAGCTATGATGACAAAAAACATAAAATAAGTTTAAGGGTTTTGAATAAGTCCATTGTTCTTTTTGTTTATCC
ATTTGAAAGTAATGAGACAAATATTGACATTTGGGAGATGGAGAAGGATGAATTTGGTGTGGTCGAAGCTATTGACGATTGA
Protein sequenceShow/hide protein sequence
MESSEGHVIMYNTKTQLFKKLPIEGDVTYVKPHRFEAHDLFIESLVSVEGGRDAVGLNPQTSQNLATQNIMAPIQRTTKKYPGIRCYKKVKTGNSQLNEIVLCLEKDGAT
LIDCPTFVSNTCAKSFVWRDVGGQEFGGMYCAILVVKVVRIVSCRGQAEFRMRVEIYDLSKDKWREIGAPDICRSASCTSTFDMYHEGIFYWWGYGEPMISEADHIITFD
MREEIFGKVSLPESYDDKKHKISLRVLNKSIVLFVYPFESNETNIDIWEMEKDEFGVVEAIDD