CuGenDBv2

Gene ID	Chy4G089340
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Cytochrome c oxidase subunit 2
Genome location	chrH04:27017877..27018543
RNA-Seq Expression	Chy4G089340
Synteny	Chy4G089340
Gene Ontology terms	GO:0022900 - electron transport chain (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0070469 - respirasome (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0005507 - copper ion binding (molecular function)
InterPro domains	IPR002429 - Cytochrome c oxidase subunit II-like C-terminal IPR008972 - Cupredoxin IPR011759 - Cytochrome C oxidase subunit II, transmembrane domain

Homology

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GenBank top hits

e value

%identity

Alignment

ABX88949.1 cytochrome oxidase subunit II, partial [Vigna radiata]

2.52e-51

91.4

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVV+PAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

AHG98425.1 cytochrome oxidase subunit 2, partial [Curcuma yunnanensis]

1.02e-50

90.32

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVV+PAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

CCA95087.1 cytochrome oxidase subunit II, partial [Laburnum anagyroides]

2.40e-50

90.32

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVV+PAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

KAA0033570.1 cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]

3.99e-51

92.47

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVVLPAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

TYK03171.1 cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]

2.24e-51

91.4

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFI IPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFD+YTIP+DDLELGQSHLLEVDNRVVLPAKTH    VTP+DVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRN3 Cytochrome-c oxidase

8.9e-39

92.47

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVVLPAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

A0A5D3BTX0 Cytochrome c oxidase subunit 2

2.3e-39

91.4

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFI IPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFD+YTIP+DDLELGQSHLLEVDNRVVLPAKTH    VTP+DVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

A0A7D6C0E1 Cytochrome c oxidase subunit 2

8.9e-39

92.47

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVVLPAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

G3EJ04 Cytochrome c oxidase subunit 2

8.9e-39

92.47

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVVLPAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

G3EU21 Cytochrome c oxidase subunit 2

8.9e-39

92.47

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVVLPAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

SwissProt top hits

e value

%identity

Alignment

P04373 Cytochrome c oxidase subunit 2

6.1e-37

84.78

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADV
        +FIAIPSFALLYSMD V+VDPA+TIKAIGHQWYR+YEYSDYNS DEQSLTFD+YTIPEDD ELGQS LLEVDNRVV+PAKTH    VTPADV
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADV

P05491 Cytochrome c oxidase subunit 2

1.6e-40

90.32

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVV+PAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

P08744 Cytochrome c oxidase subunit 2

1.3e-39

89.25

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMD V+VDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDDLELGQS LLEVDNRVV+PAKTH    VTPADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

P27168 Cytochrome c oxidase subunit 2

2.9e-39

89.25

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS DEQSLTFD+YTIPEDD ELGQS LLEVDNRVV+PAKTH    VT ADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

P98012 Cytochrome c oxidase subunit 2

1.6e-37

86.96

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADV
        MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYR+YEYSDYNS DEQSLTFD+YTIPEDD ELGQS LLEVDNRVV+PAKTH    VT ADV
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00160.1 cytochrome oxidase 2

1.4e-39

87.1

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Query:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP
        MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYRTYEYSDYNS DEQSLTFD+Y IPE+DLELGQS LLEVDNRVV+PAKTH    VT ADVP
Subjt:  MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTH----VTPADVP

Sequences

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CDS sequence

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ATGTTCATTGCTATACCATCCTTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACT
TATGAGTATTCTGACTATAACAGTTTCGATGAACAGTCACTCACTTTTGACAATTATACGATTCCAGAAGATGATCTAGAATTGGGCCAATCACATTTATTAGAA
GTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATGTAACACCTGCTGATGTACCTATACTTATACATTGA

mRNA sequence

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Protein sequence

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MFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSFDEQSLTFDNYTIPEDDLELGQSHLLEVDNRVVLPAKTHVTPADVPILIH

Chy4G089340 (gene) of Cucumber (hystrix) v1 genome