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Chy4G090300 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G090300
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein L35
Genome locationchrH04:27559939..27560581
RNA-Seq ExpressionChy4G090300
SyntenyChy4G090300
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044224.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]1.28e-5680.77Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+ WHVG +  
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPS
              GVG GY+V ALKTQIGLANA+  S
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPS

KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]8.05e-11194.51Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS  AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQRRRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ER
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHFL
        RCVAAFGVGLGYVVVALKTQI LANAI PSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLH R FL
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHFL

TYK24910.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]2.49e-5782.93Show/hide
Query:  GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCV
        GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +     
Subjt:  GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCV

Query:  AAFGVGLGYVVVALKTQIGLANA
           GVG GY+V ALKTQIGLANA
Subjt:  AAFGVGLGYVVVALKTQIGLANA

XP_008442323.1 PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]3.45e-9684.53Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +  
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHF
              GVG GY+V ALKTQIGLANA+  SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RHF
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHF

XP_038906422.1 uncharacterized protein LOC120092221 [Benincasa hispida]2.34e-8076.34Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MA+G RRSFKI+ HAKICNLYIKLKATLK PSGK QRLLKLDKLLI  DSKSES IL+QRRRTLKSRMLSFVKKHLG  RSK+PHAES  +SW VG  E 
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCV--FVLWLQKCKYL--WAMLLLIPLFPLLLFQLDTFVHLLHSRHFL
        RCVA FGVGLGY++ AL T IGL NAI PSFSS IWV LC+  FVLWL KCKYL  WA+L LI L PL L QLD FVHLLH RHFL
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCV--FVLWLQKCKYL--WAMLLLIPLFPLLLFQLDTFVHLLHSRHFL

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L352.7e-6394.29Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS  AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQRRRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ER
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLC
        RCVAAFGVGLGYVVVALKTQI LANAI PSFSSIIWVYLC
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLC

A0A1S3B4Y8 uncharacterized protein LOC1034862293.3e-7484.53Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +  
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHF
              GVG GY +VALKTQIGLANA+  SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RHF
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHF

A0A5A7TM08 RING-H2 finger protein ATL74-like4.3e-4581.89Show/hide
Query:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER
        MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+ WHVG +  
Subjt:  MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRER

Query:  RCVAAFGVGLGYVVVALKTQIGLANAI
              GVG GY +VALKTQIGLANA+
Subjt:  RCVAAFGVGLGYVVVALKTQIGLANAI

A0A5D3DNQ2 50S ribosomal protein L354.7e-4482.93Show/hide
Query:  GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCV
        GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +     
Subjt:  GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCV

Query:  AAFGVGLGYVVVALKTQIGLANA
           GVG GY +VALKTQIGLANA
Subjt:  AAFGVGLGYVVVALKTQIGLANA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACG
CCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGA
AGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTG
GGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCA
GAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACG
CCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGA
AGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTG
GGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCA
GAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA
Protein sequenceShow/hide protein sequence
MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGL
GYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHFL