; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G090330 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G090330
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchrH04:27571239..27572001
RNA-Seq ExpressionChy4G090330
SyntenyChy4G090330
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580429.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.18e-9957.93Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I+  +I EFN LFM+FVSE++L  A KL S+ SSYGL  NCRT+ I I+ YCKKG+L++A RVL QMLGRG NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVELVGR                                                          DEAMELL+EAE+NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLL GLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR + KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

KAG7017186.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.96e-9958.28Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I+  +I EFN LFM+FVSE++L  A KL S+ SSYGL  NCRT+ I I+ YCKKG+LD+A RVL QMLG G NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVELVGR                                                          DEAMELL+EAE+NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLL GLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR S KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

XP_022935128.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata]4.18e-9957.93Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I+  +I EFN LFM+FVSE++L  A KL S+ SSYGL  NCRT+ I I+ YCKKG+L++A RVL QMLGRG NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVELVGR                                                          DEAMELL+EAE+NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLL GLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR + KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

XP_023528121.1 pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp. pepo]1.18e-9857.93Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I+  +I EFN LFM+FVSE++L    KL S+ SSYGL  NCRT+ I I+ YCKKG+LD+A RVL QMLG G NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVELVGR                                                          DEAMELL+EAE+NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVELVGR---------------------------------------------------------LDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLL GLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR S KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

XP_038904608.1 pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida]1.05e-10361.03Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK  +IR  ++SEFN   MDFVSEN+L  A KL S+ SSYGL  N RT+ I I+ YCKKGEL+ AG+VLEQM+GRGHNP+DA    LVNAFCKRGKTQ
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVELVGRL---------------------------------------------------------DEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVE+VGR+                                                         DEAMELL EAE NGLKPSVVTFNTLFNGYCK
Subjt:  KASEMVELVGRL---------------------------------------------------------DEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRPVDGI VLNK++QINCTPDRITYTTLLHGLI+W KIRIAL TYKE VSSGH IE KMMNTF+RALCR S  EKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

TrEMBL top hitse value%identityAlignment
A0A5A7TMX5 Pentatricopeptide repeat-containing protein2.7e-6063.21Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQKDCQIRTRSISEFNHLFMDFVSENQ HHAQKL S+ SSYGLA NCRTYLI I+FYCKKGELD+AGRVLEQMLGRGHNP+DA    LVNAFCKRGKTQ
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVEL-------------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFN
        KA EMVEL                                                             VGR DEA+EL NEAEENGLKPSVVTFNTLFN
Subjt:  KASEMVEL-------------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFN

Query:  GYCKEGRPVDGI
        GYCKEGRPVDGI
Subjt:  GYCKEGRPVDGI

A0A5D3DMN4 Pentatricopeptide repeat-containing protein1.7e-5962.44Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQKDCQIRTRSISEFN+LFMDFVSENQ HHAQKL S+ SSYGLA NCRTYLI I+FYCKKGELD+AGRVLEQMLGRGHNP+DA    LVNAFCKRGKTQ
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVEL--------------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLF
        KA EMVEL                                                              VGR DEA+EL NEAEENGLKPSVVTFNTLF
Subjt:  KASEMVEL--------------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLF

Query:  NGYCKEGRPVDGI
        NGYCKEGRPVDGI
Subjt:  NGYCKEGRPVDGI

A0A6J1DW66 pentatricopeptide repeat-containing protein At1g09900-like7.5e-7956.75Show/hide
Query:  SQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQK
        SQKDC+I  ++ISEFN LF DFVS  +L  A +L S+ SSYGL  N RT+ I I+ YCKKG+LD+A RV +QMLG G NP+DA    LVNA C+RGK ++
Subjt:  SQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQK

Query:  ASEMVELVGRL---------------------------------------------------------DEAMELLNEAEENGLKPSVVTFNTLFNGYCKE
        A EMVELVGR+                                                         DEAMELLNEAEENGL+PSVVTFNTLFNGYCKE
Subjt:  ASEMVELVGRL---------------------------------------------------------DEAMELLNEAEENGLKPSVVTFNTLFNGYCKE

Query:  GRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        GRP+DGI+VL K++Q+NC PDRI+YTTLLHGLI+W KIR AL+TYKE VSSGH +E KMMNTF+RALCR S KEKD+LEDAHQ+ +KMK
Subjt:  GRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

A0A6J1F9P1 pentatricopeptide repeat-containing protein At1g09900-like1.0e-8057.93Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I  ++I EFN LFM+FVSE++L  A KL S+ SSYGL  NCRT+ I I+ YCKKG+L++A RVL QMLGRG NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVEL---------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVEL                                                         VGR DEAMELL+EAE+NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVEL---------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLL GLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR + KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

A0A6J1J506 pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like4.0e-8057.93Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ
        MSQK C+I  ++I EFN LFM+FVSE++L  A KL S+ +SYGL  N RT+ I I+ YCKKG+LD+A RVL QMLGRG NP+DA    LVNAFCKRGK Q
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDA----LVNAFCKRGKTQ

Query:  KASEMVEL---------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCK
        KA EMVEL                                                         VGR DEAMELL+EAE NG+KPSVVTFNTLFNGYCK
Subjt:  KASEMVEL---------------------------------------------------------VGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCK

Query:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK
        EGRP+DGI VL K++Q+NCTPDRI+Y+TLLHGLI+W KIR AL+TYKE VSSGH IE KMMNTF+RALCR + KEKD+LEDAHQ+ +KMK
Subjt:  EGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKMK

SwissProt top hitse value%identityAlignment
O04491 Putative pentatricopeptide repeat-containing protein At1g096801.7e-1928.87Show/hide
Query:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVELV------
        FN L   F  E  +  AQK+F   +   L     ++   I  YCK G LD+  R+  QM      P      AL+NA CK  K   A  + + +      
Subjt:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVELV------

Query:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV
                        G +D   E   +    GL+P +V +NTL NG+CK G  V   N+++ + +    PD+ITYTTL+ G  R   +  AL+  KE  
Subjt:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV

Query:  SSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKM
         +G  ++    +  +  +C    KE  V+ DA + L++M
Subjt:  SSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKM

Q3EDF8 Pentatricopeptide repeat-containing protein At1g099002.2e-1929Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQ
        M Q+DC      +  +  L      ++ + HA KL       G   +  TY + +   CK+G LD+A + L  M   G  P+    + ++ + C      
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQ

Query:  KASEMVELVGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIE
                 GR  +A +LL +    G  PSVVTFN L N  C++G     I++L K+ Q  C P+ ++Y  LLHG  +  K+  A++  +  VS G   +
Subjt:  KASEMVELVGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIE

Query:  PKMMNTFIRALCRTSLKEKDVLEDAHQLLKK
            NT + ALC+   K +D +E  +QL  K
Subjt:  PKMMNTFIRALCRTSLKEKDVLEDAHQLLKK

Q76C99 Protein Rf1, mitochondrial3.4e-2028.05Show/hide
Query:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMV-ELV-----
        F+ L   +  + ++  A  +FS     GL  N  TY   I   CK G ++DA    EQM+  G +P     ++L++  C   K ++A E++ E++     
Subjt:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMV-ELV-----

Query:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV
                        GR+ E+ +L       G+KP+V+T+NTL NGYC  G+  + + +L+ +  +   P+ +TY+TL++G  + S++  AL  +KE  
Subjt:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV

Query:  SSGHRIEPKMMNTFIRALCRT
        SSG   +    N  ++ L +T
Subjt:  SSGHRIEPKMMNTFIRALCRT

Q9CAN5 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial1.5e-2030.97Show/hide
Query:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKA----SEMVE------------------LV
        A  LF+   + G+  +  TY   I   C  G   DA R+L  ML R  NP+    ++L++AF K GK  +A     EM++                  + 
Subjt:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKA----SEMVE------------------LV

Query:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF
         RLDEA ++          P VVT+NTL NG+CK  + VDG+ +   + +     + +TYTTL+HG  + S    A   +K+ VS G  + P +M  NT 
Subjt:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF

Query:  IRALCRTSLKEKDVLEDAHQLLKKMK
        +  LC+    EK ++    + L+K K
Subjt:  IRALCRTSLKEKDVLEDAHQLLKKMK

Q9FIX3 Pentatricopeptide repeat-containing protein At5g397103.4e-2030.57Show/hide
Query:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDALVNAFCKRGKTQKASEMVELVGRLDEAMELL
        +N L   +  E   H A  + +    +GL  +  TY   I   CK G ++ A   L+QM  RG  P++         G +QK        G ++EA  +L
Subjt:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDALVNAFCKRGKTQKASEMVELVGRLDEAMELL

Query:  NEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALC
         E  +NG  PSVVT+N L NG+C  G+  D I VL  +++   +PD ++Y+T+L G  R   +  AL+  +E V  G + +    ++ I+  C
Subjt:  NEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALC

Arabidopsis top hitse value%identityAlignment
AT1G09680.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-2028.87Show/hide
Query:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVELV------
        FN L   F  E  +  AQK+F   +   L     ++   I  YCK G LD+  R+  QM      P      AL+NA CK  K   A  + + +      
Subjt:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVELV------

Query:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV
                        G +D   E   +    GL+P +V +NTL NG+CK G  V   N+++ + +    PD+ITYTTL+ G  R   +  AL+  KE  
Subjt:  ----------------GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERV

Query:  SSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKM
         +G  ++    +  +  +C    KE  V+ DA + L++M
Subjt:  SSGHRIEPKMMNTFIRALCRTSLKEKDVLEDAHQLLKKM

AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.6e-2029Show/hide
Query:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQ
        M Q+DC      +  +  L      ++ + HA KL       G   +  TY + +   CK+G LD+A + L  M   G  P+    + ++ + C      
Subjt:  MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQ

Query:  KASEMVELVGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIE
                 GR  +A +LL +    G  PSVVTFN L N  C++G     I++L K+ Q  C P+ ++Y  LLHG  +  K+  A++  +  VS G   +
Subjt:  KASEMVELVGRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIE

Query:  PKMMNTFIRALCRTSLKEKDVLEDAHQLLKK
            NT + ALC+   K +D +E  +QL  K
Subjt:  PKMMNTFIRALCRTSLKEKDVLEDAHQLLKK

AT1G63080.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-2130.97Show/hide
Query:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKA----SEMVE------------------LV
        A  LF+   + G+  +  TY   I   C  G   DA R+L  ML R  NP+    ++L++AF K GK  +A     EM++                  + 
Subjt:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKA----SEMVE------------------LV

Query:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF
         RLDEA ++          P VVT+NTL NG+CK  + VDG+ +   + +     + +TYTTL+HG  + S    A   +K+ VS G  + P +M  NT 
Subjt:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF

Query:  IRALCRTSLKEKDVLEDAHQLLKKMK
        +  LC+    EK ++    + L+K K
Subjt:  IRALCRTSLKEKDVLEDAHQLLKKMK

AT1G63400.1 Pentatricopeptide repeat (PPR) superfamily protein2.7e-2029.2Show/hide
Query:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVE----------------------LV
        A  LF+   + G+  N  TY   I   C      DA R+L  M+ R  NP+    +AL++AF K GK  +A ++ +                      + 
Subjt:  AQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPS----DALVNAFCKRGKTQKASEMVE----------------------LV

Query:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF
         RLDEA  +          P+VVT+NTL NG+CK  R  +G+ +  ++ Q     + +TYTTL+HG  +      A   +K+ VS G  + P +M  NT 
Subjt:  GRLDEAMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMM--NTF

Query:  IRALCRTSLKEKDVLEDAHQLLKKMK
        +  LC+    EK ++   +    KM+
Subjt:  IRALCRTSLKEKDVLEDAHQLLKKMK

AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-2130.57Show/hide
Query:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDALVNAFCKRGKTQKASEMVELVGRLDEAMELL
        +N L   +  E   H A  + +    +GL  +  TY   I   CK G ++ A   L+QM  RG  P++         G +QK        G ++EA  +L
Subjt:  FNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDALVNAFCKRGKTQKASEMVELVGRLDEAMELL

Query:  NEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALC
         E  +NG  PSVVT+N L NG+C  G+  D I VL  +++   +PD ++Y+T+L G  R   +  AL+  +E V  G + +    ++ I+  C
Subjt:  NEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAAAAAGACTGTCAGATTCGAACTCGAAGCATATCTGAATTCAATCACCTGTTCATGGATTTCGTCTCAGAAAATCAGCTACATCATGCCCAGAAACTGTTCTC
CAGTAAATCATCTTATGGTTTGGCCGCAAATTGTAGAACATATTTGATCACGATAAAATTCTATTGCAAGAAAGGAGAATTGGATGATGCAGGCAGGGTTTTGGAGCAAA
TGCTGGGAAGGGGTCATAACCCAAGCGATGCTCTCGTGAATGCTTTCTGCAAAAGGGGTAAAACGCAGAAAGCTTCAGAAATGGTTGAGCTGGTCGGCAGATTAGACGAG
GCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGCTATTGCAAGGAGGGCAGGCCAGTGGATGGAAT
CAATGTGTTGAACAAAATTAGGCAAATCAACTGCACGCCTGATCGCATTACTTATACTACTCTGCTACATGGGCTCATAAGATGGAGTAAAATTCGAATAGCCTTGAAGA
CATACAAGGAAAGGGTTAGCTCAGGCCACCGTATTGAACCAAAAATGATGAATACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGAT
GCCCATCAACTGTTAAAGAAAATGAAGGCCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAAAAAGACTGTCAGATTCGAACTCGAAGCATATCTGAATTCAATCACCTGTTCATGGATTTCGTCTCAGAAAATCAGCTACATCATGCCCAGAAACTGTTCTC
CAGTAAATCATCTTATGGTTTGGCCGCAAATTGTAGAACATATTTGATCACGATAAAATTCTATTGCAAGAAAGGAGAATTGGATGATGCAGGCAGGGTTTTGGAGCAAA
TGCTGGGAAGGGGTCATAACCCAAGCGATGCTCTCGTGAATGCTTTCTGCAAAAGGGGTAAAACGCAGAAAGCTTCAGAAATGGTTGAGCTGGTCGGCAGATTAGACGAG
GCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGCTATTGCAAGGAGGGCAGGCCAGTGGATGGAAT
CAATGTGTTGAACAAAATTAGGCAAATCAACTGCACGCCTGATCGCATTACTTATACTACTCTGCTACATGGGCTCATAAGATGGAGTAAAATTCGAATAGCCTTGAAGA
CATACAAGGAAAGGGTTAGCTCAGGCCACCGTATTGAACCAAAAATGATGAATACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGAT
GCCCATCAACTGTTAAAGAAAATGAAGGCCTGCTGA
Protein sequenceShow/hide protein sequence
MSQKDCQIRTRSISEFNHLFMDFVSENQLHHAQKLFSSKSSYGLAANCRTYLITIKFYCKKGELDDAGRVLEQMLGRGHNPSDALVNAFCKRGKTQKASEMVELVGRLDE
AMELLNEAEENGLKPSVVTFNTLFNGYCKEGRPVDGINVLNKIRQINCTPDRITYTTLLHGLIRWSKIRIALKTYKERVSSGHRIEPKMMNTFIRALCRTSLKEKDVLED
AHQLLKKMKAC