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Chy5G090560 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy5G090560
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationchrH05:98203..99953
RNA-Seq ExpressionChy5G090560
SyntenyChy5G090560
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21740.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]4.74e-6799.12Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]3.34e-6799.12Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
XP_008449895.1 PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]1.16e-67100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]9.16e-6596.46Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
         VGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.12e-6597.35Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
         VGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 219.8e-5199.12Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
A0A1S3BN38 Mediator of RNA polymerase II transcription subunit 214.4e-51100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 214.4e-51100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
A0A5D3DEB7 Mediator of RNA polymerase II transcription subunit 211.3e-5099.12Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
        VVGQELQKQLQAA
Subjt:  VVGQELQKQLQAA
A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 212.7e-4895.58Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAA
         VGQELQKQL+AA
Subjt:  VVGQELQKQLQAA
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 212.0e-4079.82Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAA
        D+VGQELQKQL+AA
Subjt:  DVVGQELQKQLQAA
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 211.4e-4179.82Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAA
        D+VGQELQKQL+AA
Subjt:  DVVGQELQKQLQAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAA
TTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCAT
TGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTA
CAAGCAGCAGGTGTTATCTCTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAA
TTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCAT
TGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTA
CAAGCAGCAGGTGTTATCTCTGTCTGA
Protein sequenceShow/hide protein sequence
MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQL
QAAGVISV