; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy5G097380 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy5G097380
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L38
Genome locationchrH05:8972624..8973400
RNA-Seq ExpressionChy5G097380
SyntenyChy5G097380
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651744.1 hypothetical protein Csa_006027 [Cucumis sativus]9.35e-5894.12Show/hide
Query:  LLNLPFVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV-VTSWSWTELLAFLKFYEPFLDF
        +LNLPFVSL GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV VTS SWTELLAFLKFYEP  DF
Subjt:  LLNLPFVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV-VTSWSWTELLAFLKFYEPFLDF

Query:  EL
        EL
Subjt:  EL

MQL86966.1 hypothetical protein [Colocasia esculenta]1.80e-3690.67Show/hide
Query:  NLPFVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        +LPF S+  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG +V
Subjt:  NLPFVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

RDX61312.1 60S ribosomal protein L38, partial [Mucuna pruriens]2.97e-3689.19Show/hide
Query:  FVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVT
        +V  F QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  ++T
Subjt:  FVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVT

TKY48313.1 60S ribosomal protein L38 [Spatholobus suberectus]1.92e-3675.53Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVTS--------WSWTELLAFLKFYEPFL
        QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  ++T         W W  +L+  K  E FL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVTS--------WSWTELLAFLKFYEPFL

XP_022946384.1 60S ribosomal protein L38 isoform X1 [Cucurbita moschata]1.61e-3697.01Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG +V
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

TrEMBL top hitse value%identityAlignment
A0A371E5K3 60S ribosomal protein L38 (Fragment)6.1e-2889.19Show/hide
Query:  FVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVT
        +V  F QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  ++T
Subjt:  FVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVVT

A0A5N6PJ44 Uncharacterized protein8.8e-2791.55Show/hide
Query:  VSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        V+L  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSLPPG +V
Subjt:  VSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

A0A6J1G3M5 60S ribosomal protein L38 isoform X11.4e-2797.01Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG +V
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

A0A6J1IBC7 60S ribosomal protein L38 isoform X11.4e-2797.01Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG +V
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

B9RM38 60S ribosomal protein L38, putative8.8e-2796.97Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG +V
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L387.7e-2892.31Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG +V
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

P46291 60S ribosomal protein L389.4e-2687.69Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG +V
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

P63173 60S ribosomal protein L384.8e-2278.46Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG AV
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

Q32PB9 60S ribosomal protein L384.8e-2278.46Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG AV
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

Q95V84 60S ribosomal protein L383.0e-2484.62Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG AV
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family5.5e-2992.31Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG +V
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV

AT3G59540.1 Ribosomal L38e protein family5.5e-2992.31Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG +V
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGTATAAATTTATCAAGCGGCATTGTTTCTGCCTCTGATATTTCCATGAATTGTATACTTCTCTTGAAAGTGTTGATGGAATTGCATAGAAGTTTCAAAACAGT
ATTGTTGAATCTACCTTTTGTTTCTCTTTTTGGACAGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCA
AGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCA
GGGACGGCTGTTGTCACGAGTTGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCGTTCTTAGATTTTGAACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGTATAAATTTATCAAGCGGCATTGTTTCTGCCTCTGATATTTCCATGAATTGTATACTTCTCTTGAAAGTGTTGATGGAATTGCATAGAAGTTTCAAAACAGT
ATTGTTGAATCTACCTTTTGTTTCTCTTTTTGGACAGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCA
AGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCA
GGGACGGCTGTTGTCACGAGTTGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCGTTCTTAGATTTTGAACTGTGA
Protein sequenceShow/hide protein sequence
MSGINLSSGIVSASDISMNCILLLKVLMELHRSFKTVLLNLPFVSLFGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
GTAVVTSWSWTELLAFLKFYEPFLDFEL