; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy5G097910 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy5G097910
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionINO80 complex subunit C
Genome locationchrH05:10353639..10366632
RNA-Seq ExpressionChy5G097910
SyntenyChy5G097910
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0031011 - Ino80 complex (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR013272 - Vps72/YL1, C-terminal
IPR029525 - INO80 complex, subunit Ies6
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]2.69e-8699.19Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]1.90e-8699.19Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]3.14e-8595.97Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]6.46e-8699.19Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]1.63e-87100Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

TrEMBL top hitse value%identityAlignment
A0A0A0LJN6 YL1_C domain-containing protein1.2e-6599.19Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A1S3B479 INO80 complex subunit C isoform X19.2e-6699.19Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1CRZ9 INO80 complex subunit C isoform X17.8e-6595.97Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1FBP9 INO80 complex subunit C isoform X11.0e-6497.58Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1HLV4 INO80 complex subunit C isoform X11.0e-6497.58Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

SwissProt top hitse value%identityAlignment
P32617 Chromatin-remodeling complex subunit IES68.4e-0837.31Show/hide
Query:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR
        Y ++E+PPS+ P K+ CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL+
Subjt:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR

Q5BJY3 INO80 complex subunit C1.6e-1440.66Show/hide
Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C1.6e-1440.66Show/hide
Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C4.2e-1542.86Show/hide
Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies61.3e-1341.24Show/hide
Query:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Subjt:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein2.3e-0563.89Show/hide
Query:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA
        K  R H  SG+VRAKF SN+PPKSMG RV   MYP+
Subjt:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA

AT1G41880.1 Ribosomal protein L35Ae family protein8.9e-0561.11Show/hide
Query:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA
        K  R H  SG+VR+KF SN+PPKSMG RV   MYP+
Subjt:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA

AT1G74270.1 Ribosomal protein L35Ae family protein2.3e-0563.89Show/hide
Query:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA
        K  R H  SG+VRAKF SN+PPKSMG RV   MYP+
Subjt:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA

AT3G55750.1 Ribosomal protein L35Ae family protein8.9e-0561.11Show/hide
Query:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA
        K  R H  SG+VR+KF SN+PPKSMG RV   MYP+
Subjt:  KGVRSHVTSGIVRAKFKSNIPPKSMGDRV---MYPA

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).5.7e-4465.32Show/hide
Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCKR+CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
         +RSL ++ V +YL++RNAAVVL+
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCATTATCGGTTCATTTCGAGACAAAGGTGTAAGATCTCATGTTACCAGTGGCATTGTTAGAGCGAAGTTCAAGTCTAATATCCCACCAAAGTCCATG
GGTGACAGGGTCATGTACCCAGCAATACTTGAACCTATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATG
TACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAAC
TATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATAT
GCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCCATTATCGGTTCATTTCGAGACAAAGGTGTAAGATCTCATGTTACCAGTGGCATTGTTAGAGCGAAGTTCAAGTCTAATATCCCACCAAAGTCCATG
GGTGACAGGGTCATGTACCCAGCAATACTTGAACCTATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATG
TACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAAC
TATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATAT
GCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGGTAG
Protein sequenceShow/hide protein sequence
MDPIIGSFRDKGVRSHVTSGIVRAKFKSNIPPKSMGDRVMYPAILEPMEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN
YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR