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Chy5G097930 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy5G097930
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchrH05:10378756..10378998
RNA-Seq ExpressionChy5G097930
SyntenyChy5G097930
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040427.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.09e-1575Show/hide
Query:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC
        MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G 
Subjt:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC
TYJ98688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.09e-1575Show/hide
Query:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC
        MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G 
Subjt:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC
TrEMBL top hitse value%identityAlignment
A0A5A7TFU1 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-1276.47Show/hide
Query:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG
        MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G
Subjt:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG
A0A5D3BKF7 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-1276.47Show/hide
Query:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG
        MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G
Subjt:  MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATATCAGCAACAATAAGAGAGTAGAAAATCAGTGCAAACCACTAGGAGGAGGTTTACAGCCGCACGAGCAGATGAAAGGCGGCGGTGGCGCCACTGAAACGAA
GAGAGACGGCGTCGACGACGACACTAAAGTGCTGAGATGGGGAAACAGCCGGCTTGGGAAAAATGGAAAAGAGAAAGAAACGGGCTTAAAGTACGGAAGAGGAAGGAGCG
ATACGTACGGTTGTGAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAATATCAGCAACAATAAGAGAGTAGAAAATCAGTGCAAACCACTAGGAGGAGGTTTACAGCCGCACGAGCAGATGAAAGGCGGCGGTGGCGCCACTGAAACGAA
GAGAGACGGCGTCGACGACGACACTAAAGTGCTGAGATGGGGAAACAGCCGGCTTGGGAAAAATGGAAAAGAGAAAGAAACGGGCTTAAAGTACGGAAGAGGAAGGAGCG
ATACGTACGGTTGTGAACCCTAG
Protein sequenceShow/hide protein sequence
MDNISNNKRVENQCKPLGGGLQPHEQMKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGCEP