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Chy6G117780 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy6G117780
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchrH06:11494376..11494820
RNA-Seq ExpressionChy6G117780
SyntenyChy6G117780
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036700.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.95e-4864.8Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVI+TDHESL HLK Q KLN RHA W+EF+ETF YVI YK GKDNVV DALS RY LF SL AK+LGF+H+ ELY  + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

KAA0062086.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.00e-4765.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDN+VADALS RY LF+SL AK+LGF+H+ ELY+ + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

KAE8650648.1 hypothetical protein Csa_011280, partial [Cucumis sativus]3.57e-7891.13Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY
        PREFVIHTDHESLNHLKEQ+KLNRRHA WIEF+ETFSYVIKYKQGKDNVVADALSGRYNLFTSL AKILGFEHVKELYRD+T+FGMI SSCLDGKVVDDY
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY

Query:  YVFRDFLFKKSNLCVLKCSIRELL
        YVFRDFLFKKS  CV KCS+RELL
Subjt:  YVFRDFLFKKSNLCVLKCSIRELL

TYK21798.1 uncharacterized protein E5676_scaffold991G00020 [Cucumis melo var. makuwa]3.58e-4765.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDNVVADALS RY LF+SL AK+LGF+H+ ELY+ + ++F  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]2.08e-4968.55Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY
        P+EFVIHTDHESL HL+ Q+KLNRRHA W+EF+ETF YVIKYKQGK+N+VADALS RY LF +L AKILGFEH+K LY DD  F     SC  G VVDDY
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY

Query:  YVFRDFLFKKSNLCVLKCSIRELL
         +F  FLF+K  LC+  CSIRELL
Subjt:  YVFRDFLFKKSNLCVLKCSIRELL

TrEMBL top hitse value%identityAlignment
A0A5A7UT46 F15O4.135.7e-4065.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDN+VADALS RY LF+SL AK+LGF+H+ ELY+ + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

A0A5A7VK67 Transposon Ty3-I Gag-Pol polyprotein5.7e-4065.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDN+VADALS RY LF+SL AK+LGF+H+ ELY+ + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

A0A5D3CK70 F15O4.135.7e-4065.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDN+VADALS RY LF+SL AK+LGF+H+ ELY+ + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

A0A5D3DRJ1 F15O4.135.7e-4065.6Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD
        P+EFVIHTDHESL HLK Q KLN+RHA W+EF+ETF YVI YK+GKDN+VADALS RY LF+SL AK+LGF+H+ ELY+ + +EF  + + CL+GK V D
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYR-DDTEFGMINSSCLDGKVVDD

Query:  YYVFRDFLFKKSNLCVLKCSIRELL
        Y VF   LF+K  LC+ KCSIRELL
Subjt:  YYVFRDFLFKKSNLCVLKCSIRELL

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241151.6e-4268.55Show/hide
Query:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY
        P+EFVIHTDHESL HL+ Q+KLNRRHA W+EF+ETF YVIKYKQGK+N+VADALS RY LF +L AKILGFEH+K LY DD  F     SC  G VVDDY
Subjt:  PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDY

Query:  YVFRDFLFKKSNLCVLKCSIRELL
         +F  FLF+K  LC+  CSIRELL
Subjt:  YVFRDFLFKKSNLCVLKCSIRELL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGAATTTGTAATTCACACTGATCATGAAAGCTTGAATCACCTTAAGGAACAAAACAAACTAAATCGTAGGCACGCAATGTGGATTGAGTTCCTTGAAACA
TTTTCCTATGTAATCAAATATAAGCAAGGTAAAGACAATGTAGTAGCTGATGCTTTGTCAGGAAGGTACAATCTCTTTACTTCTCTTGGTGCAAAAATTCTTGGA
TTTGAACATGTTAAGGAGTTATATAGGGATGACACTGAATTTGGAATGATTAATTCATCTTGTCTTGATGGAAAAGTTGTTGACGATTATTATGTGTTTCGTGAT
TTTTTGTTCAAGAAAAGTAATCTTTGTGTTCTTAAGTGTTCTATAAGAGAATTACTTGATTCTTGAATTTTTATTATGCTCATGGGGGTGGGTTAATGGGGCATT
TTGGAATTCATAAAACCTATGACAT
mRNA sequenceShow/hide mRNA sequence
CCAAGAGAATTTGTAATTCACACTGATCATGAAAGCTTGAATCACCTTAAGGAACAAAACAAACTAAATCGTAGGCACGCAATGTGGATTGAGTTCCTTGAAACA
TTTTCCTATGTAATCAAATATAAGCAAGGTAAAGACAATGTAGTAGCTGATGCTTTGTCAGGAAGGTACAATCTCTTTACTTCTCTTGGTGCAAAAATTCTTGGA
TTTGAACATGTTAAGGAGTTATATAGGGATGACACTGAATTTGGAATGATTAATTCATCTTGTCTTGATGGAAAAGTTGTTGACGATTATTATGTGTTTCGTGAT
TTTTTGTTCAAGAAAAGTAATCTTTGTGTTCTTAAGTGTTCTATAAGAGAATTACTTGATTCTTGAATTTTTATTATGCTCATGGGGGTGGGTTAATGGGGCATT
TTGGAATTCATAAAACCTATGACAT
Protein sequenceShow/hide protein sequence
PREFVIHTDHESLNHLKEQNKLNRRHAMWIEFLETFSYVIKYKQGKDNVVADALSGRYNLFTSLGAKILGFEHVKELYRDDTEFGMINSSCLDGKVVDDYYVFRD
FLFKKSNLCVLKCSIRELLDSIFIMLMGVG*WGILEFIKPMTX