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Chy6G122000 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy6G122000
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiongirdin-like
Genome locationchrH06:19281625..19282029
RNA-Seq ExpressionChy6G122000
SyntenyChy6G122000
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046902.1 girdin-like [Cucumis melo var. makuwa]7.48e-4178.82Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYD EDC GKK  AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
TYK07606.1 girdin-like [Cucumis melo var. makuwa]4.38e-4278.82Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYD EDC GKKR AV  WKS+RKIKDKGHYEGV SGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
TYK16558.1 girdin-like [Cucumis melo var. makuwa]1.01e-4180Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYD EDC GKKR AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
TYK21787.1 girdin-like [Cucumis melo var. makuwa]2.30e-4278.82Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYDLEDC G+KR AV  WKS+RKIKDKGHYEGVT+GYEAWQANRMKN+I+
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.08e-4170.75Show/hide
Query:  MDAIEGGDL*MWRCS*CAFVGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMK
        MDA E  +L MWR      +G   GVNYT  LVLR VWLKQFIP THNLQDSDF+YD EDC  KK  AV  WKS+RKIKDKGHYEGVTSGYEAWQ NR K
Subjt:  MDAIEGGDL*MWRCS*CAFVGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMK

Query:  NVIDTL
        NVI TL
Subjt:  NVIDTL
TrEMBL top hitse value%identityAlignment
A0A1S4DX26 girdin-like1.4e-3280Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNY   LVLR VWLKQFIP THNLQ+SDFSYDLEDC GKKR AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
A0A5A7T5S7 Girdin-like1.8e-3280Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYD EDC GKKR AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
A0A5D3CZ50 Girdin-like1.8e-3280Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYD EDC GKKR AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
A0A5D3DDM2 Girdin-like1.4e-3278.82Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNYT  LVLR VWLKQFIP THNLQ+SDFSYDLEDC G+KR AV  WKS+RKIKDKGHYEGVT+GYEAWQANRMKN+I+
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
A0A5D3DK34 Girdin-like1.4e-3280Show/hide
Query:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
        +G   GVNY   LVLR VWLKQFIP THNLQ+SDFSYDLEDC GKKR AV  WKS+RKIKDKGHYEGVTSGYEAWQANR KN+ID
Subjt:  VGTMRGVNYTTFLVLR*VWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGHYEGVTSGYEAWQANRMKNVID
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTTTGGGACCCAACATATCCAAGGAAGGAGACTTGTGTGTCTTTCTTTTCAACAATGAGTTCTGAAAATGTCATATGAAAGGCTCAATGGATGCCATTGAAGGCGGTGA
TTTATAGATGTGGAGATGTTCATAGTGTGCCTTTGTTGGGACCATGAGGGGTGTTAACTATACAACATTTTTAGTTTTGCGTTAGGTATGGCTGAAACAGTTTATACCAC
TAACTCATAATCTACAAGACTCTGACTTTTCATACGATCTTGAAGATTGTCATGGAAAAAAACGTTGAGCAGTATATGTATGGAAATCTATGAGGAAGATAAAAGACAAA
GGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTA
mRNA sequenceShow/hide mRNA sequence
AGTTTGGGACCCAACATATCCAAGGAAGGAGACTTGTGTGTCTTTCTTTTCAACAATGAGTTCTGAAAATGTCATATGAAAGGCTCAATGGATGCCATTGAAGGCGGTGA
TTTATAGATGTGGAGATGTTCATAGTGTGCCTTTGTTGGGACCATGAGGGGTGTTAACTATACAACATTTTTAGTTTTGCGTTAGGTATGGCTGAAACAGTTTATACCAC
TAACTCATAATCTACAAGACTCTGACTTTTCATACGATCTTGAAGATTGTCATGGAAAAAAACGTTGAGCAGTATATGTATGGAAATCTATGAGGAAGATAAAAGACAAA
GGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTA
Protein sequenceShow/hide protein sequence
SLGPNISKEGDLCVFLFNNEFKCHMKGSMDAIEGGDL*MWRCS*CAFVGTMRGVNYTTFLVLRVWLKQFIPLTHNLQDSDFSYDLEDCHGKKR*AVYVWKSMRKIKDKGH
YEGVTSGYEAWQANRMKNVIDTL