CuGenDBv2

Gene ID	Chy6G123730
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	30S ribosomal protein S6
Genome location	chrH06:22194783..22198060
RNA-Seq Expression	Chy6G123730
Synteny	Chy6G123730
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

1.46e-79

94.35

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDDDK+G  + SRLNLM
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

2.06e-84

99.19

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        FGLEFL EDDDKNGLEKLSRLNLM
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

1.39e-70

83.87

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDD KN L K  R +++
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.87e-71

85.48

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDD KN L K  R N++
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

3.90e-71

84.68

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKL+GRYYQGQLMQMTMMATPN+NKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSE+D K+ L K  RL+++
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

1.4e-63

99.19

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        FGLEFL EDDDKNGLEKLSRLNLM
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

A0A1S3BLC8 30S ribosomal protein S6

7.1e-60

94.35

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDDDK+G  + SRLNLM
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

A0A6J1CN79 uncharacterized protein LOC111013137

6.5e-53

84.68

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDD K  L K  R+ +M
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

A0A6J1FEF6 uncharacterized protein LOC111443208

4.9e-53

84.68

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDD KN L K  R  ++
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

A0A6J1KXT7 uncharacterized protein LOC111498530

4.9e-53

83.87

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLSEDDDKNGLEKLSRLNLM
        +GLEFLSEDD KN L K  R +++
Subjt:  FGLEFLSEDDDKNGLEKLSRLNLM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.5e-41

74.51

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FG
         G
Subjt:  FG

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-36

69.61

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FG
         G
Subjt:  FG

Sequences

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CDS sequence

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ATGCCTCTTTACGATGTTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTCGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGTTTTACTTAAACAAGGAGGATCGGTTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATTTGGCCTGGAATTCCTTAGCGAAGATGAT
GACAAGAATGGACTCGAAAAATTAAGTCGACTTAACTTGATGG

mRNA sequence

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Protein sequence

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MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQFGLEFLSEDD
DKNGLEKLSRLNLMX

Chy6G123730 (gene) of Cucumber (hystrix) v1 genome