; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy7G129100 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy7G129100
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationchrH07:738181..742679
RNA-Seq ExpressionChy7G129100
SyntenyChy7G129100
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.32e-4697.53Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R S
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]3.67e-4698.73Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

XP_022139601.1 uncharacterized protein LOC111010461 [Momordica charantia]1.81e-4391.36Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+R S
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]3.30e-4291.14Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.08e-4596.3Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        MAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R S
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein4.7e-3598.73Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

A0A5A7V7J3 Translation initiation factor IF-12.1e-3597.53Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R S
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

A0A6J1CD60 uncharacterized protein LOC1110104614.4e-3391.36Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+R S
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like4.9e-3291.14Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like4.9e-3291.14Show/hide
Query:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R
Subjt:  MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.2e-2779.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        EQK +HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR+R
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

A6MMF7 Translation initiation factor IF-1, chloroplastic1.2e-2779.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YR+R
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

A6MMP2 Translation initiation factor IF-1, chloroplastic2.4e-2881.16Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YR+R
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

Q94KR7 Translation initiation factor IF-1, chloroplastic1.8e-2879.01Show/hide
Query:  AKSPKNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS
        A + K D S EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYR+R S
Subjt:  AKSPKNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRS

Q95GN5 Translation initiation factor IF-1, chloroplastic5.3e-2879.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YR+R
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein4.5e-2267.57Show/hide
Query:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRM
        P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++RM
Subjt:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGTCCCCGAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGCTCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATGAAGA
CCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAGGTTAGTCGTTATGATTCTACCAAAGGTCGAA
TTGTTTATAGAATGCGAAGGAGTTGGTTATCTTTGTACTGGATGTTGCATGGTATTGCTGGCGATGATAAAAAGGCAGAACTTGAACCTTTCTTAGACTTTAAAACTATT
ACTCTAAATGGTAAAACAGCTAAAAGTGAAAATATTGTAATATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGTCCCCGAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGCTCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATGAAGA
CCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAGGTTAGTCGTTATGATTCTACCAAAGGTCGAA
TTGTTTATAGAATGCGAAGGAGTTGGTTATCTTTGTACTGGATGTTGCATGGTATTGCTGGCGATGATAAAAAGGCAGAACTTGAACCTTTCTTAGACTTTAAAACTATT
ACTCTAAATGGTAAAACAGCTAAAAGTGAAAATATTGTAATATCATAG
Protein sequenceShow/hide protein sequence
MAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRRSWLSLYWMLHGIAGDDKKAELEPFLDFKTI
TLNGKTAKSENIVIS