CuGenDBv2

Gene ID	Chy7G129960
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	F-box protein GID2-like
Genome location	chrH07:1391568..1397531
RNA-Seq Expression	Chy7G129960
Synteny	Chy7G129960
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6591404.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

9.81e-106

87.89

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSST+SS SSSS   WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

5.96e-122

97.38

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DGVGDRKMGKKPKAETQDFTRGG GEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS SST+SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

5.55e-127

98.42

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS++SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_023536623.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.28e-106

86.84

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS+++S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

8.87e-111

90.48

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPDG GDRK GKKP+AETQD     GG D SD+TGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSS     T+SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

4.2e-99

98.42

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS++SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

2.8e-95

97.38

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DGVGDRKMGKKPKAETQDFTR GGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS SST+SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

2.8e-95

97.38

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVV DGVGDRKMGKKPKAETQDFTR GGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS SST+SS SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSS-SSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1FA22 F-box protein GID2-like

1.5e-80

84.21

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSS+SS         S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1ILD7 F-box protein GID2-like

1.8e-81

85.26

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Query:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVP+G GDRK  KKP+A + D   GG     SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSSSSS+SSST      SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.8e-25

37.17

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Query:  AKMKRVVP---DGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
        AK +R  P      G+     +P  + Q   +        ++    +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   
Subjt:  AKMKRVVP---DGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN

Query:  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM
        +QLR+VVL+LGGFRRLH+++I PL                            W  +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.0e-09

27.97

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Query:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSST
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSST

Query:  SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
                     ++   P   W +D++ LSLSL  + YYE++
Subjt:  SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

1.5e-45

58.17

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Query:  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS
        ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP             
Subjt:  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS

Query:  TTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
                               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  TTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.2e-04

Show/hide

Query:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

1.1e-46

58.17

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Query:  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS
        ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP             
Subjt:  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSS

Query:  TTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
                               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  TTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

7.2e-11

27.97

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Query:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSST
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSST

Query:  SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
                     ++   P   W +D++ LSLSL  + YYE++
Subjt:  SSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGCTAAGATGAAGCGAGTTGTTCCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGCGGAGGTGGAGGAGAAGA
CTGCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCCTGTGTGAGCAAGCAAT
GGCATAAAACCGCAGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGC
GGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCCTCCTCCTCTTCCTCCTCCTCATCTTCCTCCACAACTTCATCCACATCCTCTTC
CTCGTCCGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACT
ACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

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Protein sequence

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MDAKMKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALG
GFRRLHSLFIWPLTKPQSSSSSSSSSSSSTTSSTSSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Chy7G129960 (gene) of Cucumber (hystrix) v1 genome