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Chy7G136100 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy7G136100
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
Genome locationchrH07:9075686..9076726
RNA-Seq ExpressionChy7G136100
SyntenyChy7G136100
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039112.1 putative transposase [Cucumis melo var. makuwa]4.68e-1377.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS  IP+LANIY+GLCQI DSTSSLG+SNACFP+HYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

KAA0042086.1 reverse transcriptase [Cucumis melo var. makuwa]3.73e-1277.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS V+P+LANIY+GL QI DSTSSLG+SNACFPLHYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

TYK09913.1 uncharacterized protein E5676_scaffold16G00260 [Cucumis melo var. makuwa]3.32e-1564.52Show/hide
Query:  MSNLKPPRKLRIILVVEVKRYALIKLGNEPWGKLRKVQNVCWMI*PLLHYLNFLIEVVMTMW
        M NLKPPRK RIIL V+VK YA +KL N+ W KLR+V+ V WMI PLL+ LN LI+V +TMW
Subjt:  MSNLKPPRKLRIILVVEVKRYALIKLGNEPWGKLRKVQNVCWMI*PLLHYLNFLIEVVMTMW

TYK25971.1 uncharacterized protein E5676_scaffold1441G00320 [Cucumis melo var. makuwa]2.49e-1377.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS  IP+LANIY+GLCQI DSTSSLG+SNACFP+HYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]1.05e-1260.29Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG-MACSLLQHSV*GPYES*RSMYG
        M+ GYTFS  +PVLANIY+GL Q+ DSTSSLGYSNACFPLHYV G +A     H     Y++ RS+ G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG-MACSLLQHSV*GPYES*RSMYG

TrEMBL top hitse value%identityAlignment
A0A5A7T6J5 Putative transposase8.1e-1277.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS  IP+LANIY+GLCQI DSTSSLG+SNACFP+HYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

A0A5A7TJC9 Reverse transcriptase5.2e-1177.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS V+P+LANIY+GL QI DSTSSLG+SNACFPLHYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

A0A5D3CDG3 Uncharacterized protein1.4e-1164.52Show/hide
Query:  MSNLKPPRKLRIILVVEVKRYALIKLGNEPWGKLRKVQNVCWMI*PLLHYLNFLIEVVMTMW
        M NLKPPRK RIIL V+VK YA +KL N+ W KLR+V+ V WMI PLL+ LN LI+V +TMW
Subjt:  MSNLKPPRKLRIILVVEVKRYALIKLGNEPWGKLRKVQNVCWMI*PLLHYLNFLIEVVMTMW

A0A5D3D3U4 Reverse transcriptase5.2e-1177.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS V+P+LANIY+GL QI DSTSSLG+SNACFPLHYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

A0A5D3DQM0 PMD domain-containing protein8.1e-1277.78Show/hide
Query:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG
        M+ GYTFS  IP+LANIY+GLCQI DSTSSLG+SNACFP+HYV G
Subjt:  MS*GYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTAAGGCTATACCTTTAGCTTTGTTATCCCTGTTCTAGCCAATATTTATAACGGCTTATGCCAGATTCGTGATTCTACTTCGTCTCTTGGTTATTCCAAT
GCATGTTTTCCTCTGCACTATGTTCCTGGGATGGCTTGCTCTTTACTTCAACACTCAGTATAAGGCCCTTATGAGTCTTAGAGGTCCATGTATGGTTGATTTTTT
TGGTGAAGATGGGGCCAAATACTATACAAATCTTGAGGCTTGCACACATATTCACAAGGAAAATTACGTGTTGTGGCACGAGTGCCTCCAAACAAAGAATAAAGA
TGAACTCTTAAAAGATGATGGACAATTACTTCATTGGAATGCTTCATTCTTTATAAGTATTTGATCTTTCTTTCTATCCTCACAATGTGGATCCTCCACAGTTAT
TGAACCTTATAGTCGTTGTCACTTTAGATAGCAATTTGGGTTTTATCAAGCCATGCCATATGACTTAGATGAGAAAATTTCGAATGTTGATTTTATCAATGTCTG
GTGGCTTACAAAACATGGATTACCTCCAAGAAGGAGTGCAACATGTGATAGATCACCTCACTCCCCCTCATGTCAAATCTAAAACCACCAAGAAAATTGAGAATA
ATTTTGGTAGTGGAAGTAAAAAGATATGCTCTTATAAAACTGGGGAACGAACCATGGGGAAAATTGAGGAAGGTACAAAATGTCTGTTGGATGATTTGACCCCTT
CTGCACTATTTGAACTTCCTGATAGAGGTGGTAATGACAATGTGGGTAAGGACATCCACATATTGGTAATCGACAAGCGCCCTTCTGAACATACTGAAGAAAGCC
AAAGCAACAATGATGATCGTCATTGGAAGAGACCCAAGAGGATTGGAAAACAATCGATTGATGATGAAGAGCCTCCTATTGAAGTTTTCAATGTCG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTAAGGCTATACCTTTAGCTTTGTTATCCCTGTTCTAGCCAATATTTATAACGGCTTATGCCAGATTCGTGATTCTACTTCGTCTCTTGGTTATTCCAAT
GCATGTTTTCCTCTGCACTATGTTCCTGGGATGGCTTGCTCTTTACTTCAACACTCAGTATAAGGCCCTTATGAGTCTTAGAGGTCCATGTATGGTTGATTTTTT
TGGTGAAGATGGGGCCAAATACTATACAAATCTTGAGGCTTGCACACATATTCACAAGGAAAATTACGTGTTGTGGCACGAGTGCCTCCAAACAAAGAATAAAGA
TGAACTCTTAAAAGATGATGGACAATTACTTCATTGGAATGCTTCATTCTTTATAAGTATTTGATCTTTCTTTCTATCCTCACAATGTGGATCCTCCACAGTTAT
TGAACCTTATAGTCGTTGTCACTTTAGATAGCAATTTGGGTTTTATCAAGCCATGCCATATGACTTAGATGAGAAAATTTCGAATGTTGATTTTATCAATGTCTG
GTGGCTTACAAAACATGGATTACCTCCAAGAAGGAGTGCAACATGTGATAGATCACCTCACTCCCCCTCATGTCAAATCTAAAACCACCAAGAAAATTGAGAATA
ATTTTGGTAGTGGAAGTAAAAAGATATGCTCTTATAAAACTGGGGAACGAACCATGGGGAAAATTGAGGAAGGTACAAAATGTCTGTTGGATGATTTGACCCCTT
CTGCACTATTTGAACTTCCTGATAGAGGTGGTAATGACAATGTGGGTAAGGACATCCACATATTGGTAATCGACAAGCGCCCTTCTGAACATACTGAAGAAAGCC
AAAGCAACAATGATGATCGTCATTGGAAGAGACCCAAGAGGATTGGAAAACAATCGATTGATGATGAAGAGCCTCCTATTGAAGTTTTCAATGTCG
Protein sequenceShow/hide protein sequence
MSGYTFSFVIPVLANIYNGLCQIRDSTSSLGYSNACFPLHYVPGMACSLLQHSV*GPYESRSMYG*FFW*RWGQILYKS*GLHTYSQGKLRVVARVPPNKE*R*T
LKR*WTITSLECFILYKYLIFLSILTMWILHSYTL*SLSL*IAIWVLSSHAI*LR*ENFEC*FYQCLVAYKTWITSKKECNM*ITSLPLMSNLKPPRKLRIILVV
EVKRYALIKLGNEPWGKLRKVQNVCWMIPLLHYLNFLIEVVMTMWVRTSTYW*STSALLNILKKAKATMMIVIGRDPRGLENNRLMMKSLLLKFSMS