CuGenDBv2

Gene ID	Chy7G145190
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chrH07:20740283..20745204
RNA-Seq Expression	Chy7G145190
Synteny	Chy7G145190
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

6.94e-302

98.16

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAP TAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

9.91e-304

98.85

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAPA AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

1.56e-283

92.22

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW E REP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_023528576.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

6.33e-283

91.99

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR FH+SIL CSSTSQSPEAN++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNP+EAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW E REP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

4.41e-291

95.63

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHL T S+PKS TILRPRL TSQR FH+SIL  SSTSQSPEANL+SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAPAT AAA LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

2.3e-238

98.16

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAP TAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

9.3e-240

98.85

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAPA AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

9.3e-240

98.85

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGE REPQIEKKGFGAPA AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1F472 protein LOW PSII ACCUMULATION 1, chloroplastic

2.1e-223

91.99

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPEAN++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW E RE ++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

1.9e-224

92.22

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW E REP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

1.5e-173

70.26

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Query:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

1.0e-174

70.26

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Query:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

9.7e-32

31.23

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Query:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAE
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V                    A A     P +  D    A    ++ + K  
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGFGAPATAAAAALPSIGEDFEKRAQSITAKSKLKAE

Query:  IRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL
          +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  IRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL

Sequences

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CDS sequence

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ATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTTCCCACCCTTTCAAACCCCAAATCACCCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGGACTTTCCATCT
CTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATCTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACGATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAGGTTCT
TTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTT
ATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAG
CCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGCTAGGGAACCCCAAATAGAAAAGAAAGGGTTT
GGTGCTCCAGCCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATT
CAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCCGAAGGGGTCACCCCTGGTGAGGATGTGTACATAATATTGCGATTGGATG
GTCGAGTTCGAAGATCAGGAAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETA
GNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEAREPQIEKKGF
GAPATAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

Chy7G145190 (gene) of Cucumber (hystrix) v1 genome