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Chy8G148190 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy8G148190
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchrH08:4945527..4947019
RNA-Seq ExpressionChy8G148190
SyntenyChy8G148190
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]3.24e-9197.39Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIG QPKHFNGVRLRNH FVENTASLVVKAASETDATGETDS +VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_008455762.1 PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]2.56e-8393.46Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIG QPK FNGVRLRNHPFVENTASLVVKAASETDATGE DS EVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]4.82e-7182.58Show/hide
Query:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPV
        FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+G QPK FNGVRLRN  FVENTASL+VKA SE D TGETDS E QP AEAKKEDVPV
Subjt:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPV

Query:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]8.52e-7080.89Show/hide
Query:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDV
        FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP G QPKHFNGVRLRN  FVENT S  VKAASE DATGETDS E +P+AEAKKEDV
Subjt:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]1.28e-7384.81Show/hide
Query:  MASFLLSSNPLSTSFH---FST--SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED
        MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIG QPKHFNGVRL    FVEN ASL+VKAASE DA G+TDS E QP AEAKKED
Subjt:  MASFLLSSNPLSTSFH---FST--SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein2.5e-7097.39Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIG QPKHFNGVRLRNH FVENTASLVVKAASETDATGETDS +VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic3.4e-6493.46Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIG QPK FNGVRLRNHPFVENTASLVVKAASETDATGE DS EVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic5.0e-5582.05Show/hide
Query:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVP
        +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+G QPK FNGVRLRN  FVENTASL+VKA SE D TGETDS E QP AEAKKEDVP
Subjt:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like2.1e-5379.75Show/hide
Query:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED
        +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP G QPKHFNGVRLRN  FVENT S +VKAASE DATGETDS E +P AEAKKED
Subjt:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like3.6e-5379.49Show/hide
Query:  SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVP
        +FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP G QPKHFNGVRLRN  FVENT S +VKAASE D TGETDS E +P+AEAKKEDVP
Subjt:  SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic9.8e-1647.52Show/hide
Query:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED-VPVDKLPLESKLQERLE
        F+T+P   S S FP  +A P S +    IG+      G R+   P V+      +  AS         +  V+ +   K+ D V VDKLPLESKL+ER E
Subjt:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKED-VPVDKLPLESKLQERLE

Query:  QKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        +  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  QKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.8e-1444.53Show/hide
Query:  SPSCFPPTSAIPSSM----LLMKPIGIQPKHFNGVRLRNH-PFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKAR
        S S  PP ++I  S     + ++ + +      G RL  H P +      VV   S   A  E  +GE    ++ ++ ++ V  LPLESKLQ +LEQK +
Subjt:  SPSCFPPTSAIPSSM----LLMKPIGIQPKHFNGVRLRNH-PFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKAR

Query:  MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.8e-1445.51Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP  ++ K  N V L  +    +   +VVKAA+      E +S E      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.3e-1545.51Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP  ++ K  N V L  +    +   +VVKAA+      E +S E      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCCCCGTCGCCGTCATGTTTTCCACCGACTTCTGCCATCCCTAGTTCT
ATGTTGCTCATGAAGCCTATTGGGATTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCATCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCT
GCATCTGAGACTGATGCTACAGGAGAAACTGACAGTGGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCA
AAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGA
CGCTGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCCCCGTCGCCGTCATGTTTTCCACCGACTTCTGCCATCCCTAGTTCT
ATGTTGCTCATGAAGCCTATTGGGATTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCATCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCT
GCATCTGAGACTGATGCTACAGGAGAAACTGACAGTGGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCA
AAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGA
CGCTGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA
Protein sequenceShow/hide protein sequence
MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLES
KLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV