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Chy8G150920 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy8G150920
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRibosomal_TL5_C domain-containing protein
Genome locationchrH08:11946896..11947594
RNA-Seq ExpressionChy8G150920
SyntenyChy8G150920
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045879.1 50S ribosomal protein L25 [Cucumis melo var. makuwa]3.13e-3877.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLR A LSGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQ+LEKN VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
XP_004148437.1 uncharacterized protein LOC101208580 [Cucumis sativus]8.30e-3777.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MA  W S  TNLRLAA SGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQILEKN+VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
XP_008457885.1 PREDICTED: 50S ribosomal protein L25 [Cucumis melo]3.45e-3777.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLR A LSGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQ+LEKN VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
XP_022928099.1 uncharacterized protein LOC111434985 [Cucurbita moschata]2.18e-3270.21Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLRL ALS  +S+ FPFSS + A YHTIQAIP++CSGS+IS++DRAQGRIPAVVFSQQ+LEKN++HGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
XP_022971722.1 uncharacterized protein LOC111470391 [Cucurbita maxima]7.81e-3371.28Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLRL ALS  +S+ FPFSS + A YHTIQAIP++CSGS+ISS+DRAQGRIPAVVFSQQ+LEKN++HGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
TrEMBL top hitse value%identityAlignment
A0A0A0LJM8 Ribosomal_TL5_C domain-containing protein3.7e-2977.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MA  W S  TNLRLAA SGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQILEKN+VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
A0A1S3C6P2 50S ribosomal protein L251.7e-2977.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLR A LSGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQ+LEKN VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
A0A5A7TX73 50S ribosomal protein L251.7e-2977.42Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLR A LSGTKS+ FPFSSF+ AYHTIQAIP++CSG KISSKDRAQGRIPAVVFSQQ+LEKN VHGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
A0A6J1EJW5 uncharacterized protein LOC1114349851.1e-2570.21Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLRL ALS  +S+ FPFSS + A YHTIQAIP++CSGS+IS++DRAQGRIPAVVFSQQ+LEKN++HGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
A0A6J1I2R7 uncharacterized protein LOC1114703915.0e-2671.28Show/hide
Query:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
        MAK W S GTNLRL ALS  +S+ FPFSS + A YHTIQAIP++CSGS+ISS+DRAQGRIPAVVFSQQ+LEKN++HGSPS KHLL    K+ HS
Subjt:  MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVA-YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL----KETHS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G66860.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain5.1e-0750.98Show/hide
Query:  YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL
        Y TIQAIP++ +G  +S++DR  GRIPAVVF Q +L+ +A     S K LL
Subjt:  YHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGAGGTGGTGCTCCGTCGGAACGAACCTTAGGTTGGCGGCATTGTCAGGAACAAAATCGAAATTGTTTCCATTTTCATCATTTCAAGTTGCTTACCATACGAT
CCAAGCAATTCCTAAAAAGTGCAGCGGCAGCAAAATTTCGAGCAAAGATAGAGCTCAAGGAAGAATACCCGCTGTCGTTTTCAGTCAACAAATCCTTGAGAAAAACGCAG
TCCATGGATCACCGTCGTGTAAACATCTGCTCAAGGAAACCCATTCTGCCGCCGCACCTACTCAGATCCGCCGCCGCTTGTCCAGATCCTCAATCTCCTTTTTGTTCGTC
GGTCTCAAACTACGGCAAGGCCATTTGAAAAGAAGAATGCTCATGACACGTCCTTCCACAGCATCGGCAATGATGTCGTTGCCAGAAGGTATTGAAACTGCATTTGCAGA
CATCGCAACGTGCTGCTTCTTGGGAAGGAGGCGGATAATTTTGAGGGAGAGGAACCACTGTGGTGGGCAGCGGAGTGCGGGGATCTCCTCCGACCTCCGAGCTGAGGAAG
AAACTGGCAGTGAAACTTGGGAACTCCGACAGCTGGAAATATCTTCCCCGAAAAGTCCTCTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGAGGTGGTGCTCCGTCGGAACGAACCTTAGGTTGGCGGCATTGTCAGGAACAAAATCGAAATTGTTTCCATTTTCATCATTTCAAGTTGCTTACCATACGAT
CCAAGCAATTCCTAAAAAGTGCAGCGGCAGCAAAATTTCGAGCAAAGATAGAGCTCAAGGAAGAATACCCGCTGTCGTTTTCAGTCAACAAATCCTTGAGAAAAACGCAG
TCCATGGATCACCGTCGTGTAAACATCTGCTCAAGGAAACCCATTCTGCCGCCGCACCTACTCAGATCCGCCGCCGCTTGTCCAGATCCTCAATCTCCTTTTTGTTCGTC
GGTCTCAAACTACGGCAAGGCCATTTGAAAAGAAGAATGCTCATGACACGTCCTTCCACAGCATCGGCAATGATGTCGTTGCCAGAAGGTATTGAAACTGCATTTGCAGA
CATCGCAACGTGCTGCTTCTTGGGAAGGAGGCGGATAATTTTGAGGGAGAGGAACCACTGTGGTGGGCAGCGGAGTGCGGGGATCTCCTCCGACCTCCGAGCTGAGGAAG
AAACTGGCAGTGAAACTTGGGAACTCCGACAGCTGGAAATATCTTCCCCGAAAAGTCCTCTTCAATAA
Protein sequenceShow/hide protein sequence
MAKRWCSVGTNLRLAALSGTKSKLFPFSSFQVAYHTIQAIPKKCSGSKISSKDRAQGRIPAVVFSQQILEKNAVHGSPSCKHLLKETHSAAAPTQIRRRLSRSSISFLFV
GLKLRQGHLKRRMLMTRPSTASAMMSLPEGIETAFADIATCCFLGRRRIILRERNHCGGQRSAGISSDLRAEEETGSETWELRQLEISSPKSPLQ