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Chy9G166830 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy9G166830
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description40S ribosomal protein S20
Genome locationchrH09:12356628..12357934
RNA-Seq ExpressionChy9G166830
SyntenyChy9G166830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143650.1 40S ribosomal protein S20-2 [Cucumis sativus]5.33e-7798.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_006421732.1 40S ribosomal protein S20-2 [Citrus clementina]1.92e-7798.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]1.92e-7798.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_008467267.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]4.56e-7899.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata]7.58e-7798.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

TrEMBL top hitse value%identityAlignment
A0A1S4E624 40S ribosomal protein S20-27.0e-6099.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A2H5NMF8 Ribosomal_S10 domain-containing protein2.0e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A5A7VKH9 40S ribosomal protein S20-2-like2.0e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A5D3DB09 40S ribosomal protein S20-27.0e-6099.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

V4S3T5 Ribosomal_S10 domain-containing protein2.0e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

SwissProt top hitse value%identityAlignment
P23403 40S ribosomal protein S201.1e-4173.83Show/hide
Query:  DAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
        D +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVE
Subjt:  DAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE

Query:  VEVTIAD
        VEVTIAD
Subjt:  VEVTIAD

P35686 40S ribosomal protein S204.8e-5083.61Show/hide
Query:  MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIAD
        VVKQITSITIEPGVEVEVTI+D
Subjt:  VVKQITSITIEPGVEVEVTIAD

P49200 40S ribosomal protein S20-11.0e-5591.67Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S201.4e-4169.23Show/hide
Query:  AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-21.2e-5692.56Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein7.1e-5791.67Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein8.4e-5892.56Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein8.4e-5892.56Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein8.4e-5892.56Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein7.1e-5791.67Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAA
GGTTTGTACTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTCAAGGGACCTGTGAGGATGCCAACTAAAGTCCTGCACATCACCACAAGGAAATCTCCCTGCG
GCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAA
CCCGGTGTTGAGGTTGAAGTCACAATTGCCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAA
GGTTTGTACTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTCAAGGGACCTGTGAGGATGCCAACTAAAGTCCTGCACATCACCACAAGGAAATCTCCCTGCG
GCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAA
CCCGGTGTTGAGGTTGAAGTCACAATTGCCGATTGA
Protein sequenceShow/hide protein sequence
MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIAD