CuGenDBv2

Gene ID	Chy9G168510
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S13
Genome location	chrH09:13581459..13582182
RNA-Seq Expression	Chy9G168510
Synteny	Chy9G168510
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.58e-93

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]

2.26e-94

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]

3.75e-93

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]

3.75e-93

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]

1.31e-93

99.29

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMS8 Ribosomal_S13_N domain-containing protein

6.3e-73

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A1S3ATA6 40S ribosomal protein S13-like

6.3e-73

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1DVX9 40S ribosomal protein S13-like

5.4e-72

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1E411 40S ribosomal protein S13-like

5.4e-72

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1HYG9 40S ribosomal protein S13-like

5.4e-72

98.57

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

2.4e-69

92.14

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-1

5.3e-69

91.43

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-2

1.4e-69

92.14

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S13

8.0e-73

96.43

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI1 40S ribosomal protein S13-2

8.8e-64

85.71

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

3.8e-70

91.43

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A

1.0e-70

92.14

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGAT
AATATCTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAAAAGTGTTACCGGAAACAAA
ATCTTGCGTATTCTTAAGGCTCATGGACTTGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAAC
AGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCTGTTTGGAAA
TAG

mRNA sequence

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Protein sequence

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MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN
RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Chy9G168510 (gene) of Cucumber (hystrix) v1 genome