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ChyUNG226100 (gene) of Cucumber (hystrix) v1 genome

Gene IDChyUNG226100
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationscaffold25_size3045174:299017..299302
RNA-Seq ExpressionChyUNG226100
SyntenyChyUNG226100
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035161.1 retrotransposon protein [Cucumis melo var. makuwa]1.39e-2692.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP LGEGDSSEMNIENINFVE TN+WTEWRDNLAN+MFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]2.23e-2492.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP L EGDSSEMNIENINFVE TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]9.18e-2490.2Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP LGE DSSEMNIENINFVE  N+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]8.80e-2492.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATF+EP LGEGDSSEMNIENINFVE TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]4.01e-2388.24Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        +GS+ATFEEP LGEGDSSEMNIENINF+E TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
TrEMBL top hitse value%identityAlignment
A0A5A7T0P1 Retrotransposon protein1.4e-1992.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP LGEGDSSEMNIENINFVE TN+WTEWRDNLAN+MFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
A0A5A7U5I3 Retrotransposon protein3.0e-1992.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP L EGDSSEMNIENINFVE TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
A0A5A7VE44 Retrotransposon protein1.5e-1890.2Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATFEEP LGE DSSEMNIENINFVE  N+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
A0A5A7VG45 Retrotransposon protein1.8e-1992.16Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        MGSEATF+EP LGEGDSSEMNIENINFVE TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
A0A5D3C542 Retrotransposon protein8.8e-1988.24Show/hide
Query:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
        +GS+ATFEEP LGEGDSSEMNIENINF+E TN+WTEWRDNLANQMFEDWNN
Subjt:  MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTGAGGCAACATTTGAGGAGCCACAGCTTGGAGAAGGTGATTCAAGTGAGATGAACATTGAGAATATAAACTTCGTGGAAATGACTAATATTTGGACT
GAATGGAGGGATAATCTTGCCAACCAAATGTTTGAGGATTGGAATAATTCAGAAATACATGGGGTTTCCTCTAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTGAGGCAACATTTGAGGAGCCACAGCTTGGAGAAGGTGATTCAAGTGAGATGAACATTGAGAATATAAACTTCGTGGAAATGACTAATATTTGGACT
GAATGGAGGGATAATCTTGCCAACCAAATGTTTGAGGATTGGAATAATTCAGAAATACATGGGGTTTCCTCTAAATTATGA
Protein sequenceShow/hide protein sequence
MGSEATFEEPQLGEGDSSEMNIENINFVEMTNIWTEWRDNLANQMFEDWNNSEIHGVSSKL