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ChyUNG227360 (gene) of Cucumber (hystrix) v1 genome

Gene IDChyUNG227360
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
Genome locationscaffold25_size3045174:2664173..2664369
RNA-Seq ExpressionChyUNG227360
SyntenyChyUNG227360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047412.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]1.76e-0552.27Show/hide
Query:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV
        C AFGH   K PR VE+KV +EE V K++P K+D+L +  CG V
Subjt:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]3.28e-0552.27Show/hide
Query:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV
        C AFGH GSKC R VE+K  +EE V K++  K+D L +  CG V
Subjt:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.10e-0445.45Show/hide
Query:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV
        C A GH G KCPR VE+K+ +EE V K++P K + + +  C  V
Subjt:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV

XP_004142722.2 uncharacterized protein LOC101204295 [Cucumis sativus]5.37e-0477.78Show/hide
Query:  RAFGHFGSKCPRIVENKVHREEEVRKV
        RAF H   KCPRIVENKVH EEEVRK+
Subjt:  RAFGHFGSKCPRIVENKVHREEEVRKV

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]3.28e-0552.27Show/hide
Query:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV
        C AFGH GSKC R VE+K  +EE V K++  K+D L +  CG V
Subjt:  CRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVV

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAATGCCTTATGCCGTTATCTATTGGCTTATTGAGAAAATATGGGGTAAAATTGAAATGTCGTGCCTTTGGGCATTTTGGTAGTAAGTGCCCTAGGATT
GTGGAGAATAAGGTACATCGGGAAGAGGAAGTGAGAAAGGTGGTTCCTAACAAAAAGGACGATTTGACTAATGTGGCGTGTGGAGTTGTGAT
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAATGCCTTATGCCGTTATCTATTGGCTTATTGAGAAAATATGGGGTAAAATTGAAATGTCGTGCCTTTGGGCATTTTGGTAGTAAGTGCCCTAGGATT
GTGGAGAATAAGGTACATCGGGAAGAGGAAGTGAGAAAGGTGGTTCCTAACAAAAAGGACGATTTGACTAATGTGGCGTGTGGAGTTGTGAT
Protein sequenceShow/hide protein sequence
MQKCLMPLSIGLLRKYGVKLKCRAFGHFGSKCPRIVENKVHREEEVRKVVPNKKDDLTNVACGVVX