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ChyUNG228690 (gene) of Cucumber (hystrix) v1 genome

Gene IDChyUNG228690
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDUF4283 domain-containing protein
Genome locationscaffold26_size3936274:2531514..2531820
RNA-Seq ExpressionChyUNG228690
SyntenyChyUNG228690
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047412.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]8.72e-2959.8Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT+NL+GVDFIV ++NY+ KP+KCNLCWAFGH SGK  R VE+KV +EE VSK++  K ++L +   G VV ESFKQLE+ EI S PNR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

KAA0048521.1 uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa]2.24e-2863.44Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNR
        MP EIT++L+GVDFIV+V NYEWKP+KCNLC AF H SGKC R VEN V +E  VSK++  K ++L +   G+VV ESFKQLEE EI S PNR
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNR

KAA0060724.1 hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa]7.21e-2760.78Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT++L+GVDFIV+ INYEWKP KCNLC  FGH  GKC R VE+KV +EE VSKV  +K + L +   G+VV ESFKQLEE EI S  NR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.75e-2759.8Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        M  EIT+NL+GVDF V+V NYEWKPQKCNLC A GH  GKC R VE+K+ +EE VSK++  K E + +     VV ESFKQLEE EI S PNR   H E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

TYK28312.1 uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]2.24e-2863.44Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNR
        MP EIT++L+GVDFIV+V NYEWKP+KCNLC AF H SGKC R VEN V +E  VSK++  K ++L +   G+VV ESFKQLEE EI S PNR
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNR

TrEMBL top hitse value%identityAlignment
A0A5A7TVB8 Putative non-LTR retroelement reverse transcriptase6.8e-2459.8Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT+NL+GVDFIV ++NY+ KP+KCNLCWAFGH SGK  R VE+KV +EE VSK++  K ++L +   G VV ESFKQLE+ EI S PNR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

A0A5A7U4M4 Reverse transcriptase domain-containing protein1.5e-2360.4Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT++L+GVDFIV+V NYEWKP+KCNLC AF H SGKC R VEN V +E  VSK++  K ++L +   G+VV ESFKQLEE EI S PNR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  E
        E
Subjt:  E

A0A5A7V084 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein3.7e-2260.78Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT++L+GVDFIV+ INYEWKP KCNLC  FGH  GKC R VE+KV +EE VSKV  +K + L +   G+VV ESFKQLEE EI S  NR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.3e-2259.8Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        M  EIT+NL+GVDF V+V NYEWKPQKCNLC A GH  GKC R VE+K+ +EE VSK++  K E + +     VV ESFKQLEE EI S PNR   H E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  EV
        EV
Subjt:  EV

A0A5D3DXQ8 Reverse transcriptase domain-containing protein1.5e-2360.4Show/hide
Query:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN
        MP EIT++L+GVDFIV+V NYEWKP+KCNLC AF H SGKC R VEN V +E  VSK++  K ++L +   G+VV ESFKQLEE EI S PNR     E 
Subjt:  MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEEN

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTCGAAATTACACTTAACCTTCAGGGAGTGGATTTCATTGTGACTGTGATTAATTATGAGTGGAAGCCCCAAAAATGTAATTTGTGTTGGGCTTTTGGGCATTT
TAGTGGTAAGTGTGCTAGGATTGTGGAGAATAAGGTACATCGGGAGGAGGATGTGAGCAAGGTGGTTTCTAATAAAGAGGAGGATCTGACTAATGTGGCTTTTGGGGATG
TGGTGTTTGAGTCGTTTAAACAGTTGGAGGAATGTGAGATTAACAGTTTCCCGAATAGAACTATTATTCATGAGGAAAATGAGGTGG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTCGAAATTACACTTAACCTTCAGGGAGTGGATTTCATTGTGACTGTGATTAATTATGAGTGGAAGCCCCAAAAATGTAATTTGTGTTGGGCTTTTGGGCATTT
TAGTGGTAAGTGTGCTAGGATTGTGGAGAATAAGGTACATCGGGAGGAGGATGTGAGCAAGGTGGTTTCTAATAAAGAGGAGGATCTGACTAATGTGGCTTTTGGGGATG
TGGTGTTTGAGTCGTTTAAACAGTTGGAGGAATGTGAGATTAACAGTTTCCCGAATAGAACTATTATTCATGAGGAAAATGAGGTGG
Protein sequenceShow/hide protein sequence
MPVEITLNLQGVDFIVTVINYEWKPQKCNLCWAFGHFSGKCARIVENKVHREEDVSKVVSNKEEDLTNVAFGDVVFESFKQLEECEINSFPNRTIIHEENEVX