; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ChyUNG230160 (gene) of Cucumber (hystrix) v1 genome

Gene IDChyUNG230160
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationscaffold32_size1584725:763382..773050
RNA-Seq ExpressionChyUNG230160
SyntenyChyUNG230160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038322.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.26e-0832.24Show/hide
Query:  MFCHFVPSTKDHRWINIDGSRRC*GDGGDVPPHPCT*HEKSCDSKRIHAVE*DNITSFQHGAACSHSLG**AVE------------KPLPSYVAKLSW--
        MF HF P T+DH W NID SRRC GDG +VP      H    D K    ++ + + S   G   SH L    +             +P+P+      W  
Subjt:  MFCHFVPSTKDHRWINIDGSRRC*GDGGDVPPHPCT*HEKSCDSKRIHAVE*DNITSFQHGAACSHSLG**AVE------------KPLPSYVAKLSW--

Query:  ---CI-------------R*HRV**RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR
           C+                R   RT K EVATNVLGVCD KG  +++    + S       R      R  G KG L P R
Subjt:  ---CI-------------R*HRV**RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR

KAA0042164.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.69e-0735.64Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF
        RT  G  +T V+ V +     +HI+  +   C L      + K   + G +          P+   F  T+QR TLPLAG+ WR +CT N++RVLQYE F
Subjt:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF

Query:  F
        F
Subjt:  F

KAA0055933.1 retrotransposon protein [Cucumis melo var. makuwa]3.43e-0733.63Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF
        RT KGE+ATNVLGVC+ KG  ++++                       G +G ++ S          S  VQR T+PLA + W  +CT   + VLQ+EA 
Subjt:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF

Query:  FCKKCN*KSIRRL
        F K+C+   +R +
Subjt:  FCKKCN*KSIRRL

KAA0066806.1 retrotransposon protein [Cucumis melo var. makuwa]3.65e-0633.98Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHII--WLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYE
        RT+KGE++TNVLGVCD KG  ++++  W        G  +      +   G  GL +P           S  VQR T+P A + W  +C    + VLQ+E
Subjt:  RTQKGEVATNVLGVCDKKGFCIHII--WLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYE

Query:  AFF
          F
Subjt:  AFF

TYK01364.1 retrotransposon protein [Cucumis melo var. makuwa]5.94e-0756.14Show/hide
Query:  QKGEVATNVLGV-CDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR
        QK EVATNVLGV   K+ FC+ +  L RI  RL H SRC+FK ER EG +G    SR
Subjt:  QKGEVATNVLGV-CDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR

TrEMBL top hitse value%identityAlignment
A0A5A7T4A8 Putative nuclease HARBI13.3e-0833.56Show/hide
Query:  MFCHFVPSTKDHRWINIDGSRRC*GDGGDVPPHPCT*HEKSCDSKRIHAVE*DNITSFQHGAACSHSLG**AV------------EKPLPSYVAKLSW--
        MF HF P T+DH W NID SRRC GDG +VP      H    D K    ++ + + S   G   SH L    +             +P+P+      W  
Subjt:  MFCHFVPSTKDHRWINIDGSRRC*GDGGDVPPHPCT*HEKSCDSKRIHAVE*DNITSFQHGAACSHSLG**AV------------EKPLPSYVAKLSW--

Query:  ---CI-------------R*HRV**RTQKGEVATNVLGVCDKKGFCIHI
           C+                R   RT K EVATNVLGVCD KG  +++
Subjt:  ---CI-------------R*HRV**RTQKGEVATNVLGVCDKKGFCIHI

A0A5A7TFF9 Putative nuclease HARBI11.1e-0635.64Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF
        RT  G  +T V+ V +     +HI+  +   C L      + K   + G +          P+   F  T+QR TLPLAG+ WR +CT N++RVLQYE F
Subjt:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF

Query:  F
        F
Subjt:  F

A0A5A7UJ27 Retrotransposon protein3.6e-0733.63Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF
        RT KGE+ATNVLGVC+ KG  ++++                       G +G ++ S          S  VQR T+PLA + W  +CT   + VLQ+EA 
Subjt:  RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAF

Query:  FCKKCN*KSIRRL
        F K+C+   +R +
Subjt:  FCKKCN*KSIRRL

A0A5A7VK86 Retrotransposon protein3.1e-0635.92Show/hide
Query:  RTQKGEVATNVLGVCDKKGFCIHII--WLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYE
        RT+KGE++TNVLGVCD KG  ++++  W        G  +      +   G  GL      +VPK    S  VQR T+P A + W  +C    + VLQ+E
Subjt:  RTQKGEVATNVLGVCDKKGFCIHII--WLERISCRLGHPSRCHFKTERTEGAKGLLLPSR*RVPKC*RFSSTVQRATLPLAGLTWR*ECTVNIERVLQYE

Query:  AFF
          F
Subjt:  AFF

A0A5D3BQB5 Retrotransposon protein3.1e-0656.14Show/hide
Query:  QKGEVATNVLGV-CDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR
        QK EVATNVLGV   K+ FC+ +  L RI  RL H SRC+FK ER EG +G    SR
Subjt:  QKGEVATNVLGV-CDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCAACATATTTTGGCATGATTCATGTGTTAGACCTAGTGTGTCGGGAAAGTACGAGAATGAACCGAAGATGTTTTGCCATTTTGTGCCATCTACTAAGGACCATCGTTG
GATTAACATCGACGGAAGTCGTCGATGTTGAGGAGATGGTGGTGATGTTCCTCCACATCCTTGCACATGACATGAAAAATCGTGTGATTCAAAGAGAATTCATGCAGTCG
AGTGAGACAATATCACGTCATTTCAACATGGTGCTGCTTGCAGTCATTCGCTTGGATGATGAGCTGTTGAAAAACCACTACCATCATACGTTGCAAAATTGTCTTGGTGC
ATTAGATGACACCGGGTTTGATAAAGAACACAAAAGGGCGAAGTGGCCACAAATGTCCTTGGTGTATGTGACAAAAAGGGATTTTGTATTCATATTATCTGGTTGGAAAG
GATCAGCTGCAGACTCGGGCATCCTTCGAGATGCCATTTCAAGACCGAACGGACCGAGGGTGCCAAAGGACTATTACTACCTAGTCGATGACGAGTACCCAAATGTTGAA
GGTTTTCTAGCACTGTACAGAGGGCAACACTACCACTTGCAGGACTGACGTGGCGTTGAGAATGCACCGTCAACATTGAAAGAGTTCTTCAATATGAAGCATTCTTTTGC
AAGAAATGTAATTGAAAGAGCATTCGACGTCTTGAAGAGTCAATGGGCAATACCACAAGGAAAGTTGTACTACCCTGTAGAAGTCCAATGTCGGACGATACTCGCATGTT
GTCTTCTGCACAACCTCATCAATAGAGAAATGACGAACTTCGATATACCCGACGACGTAAATGAGGGTGATTCAACCCACGCGACTACTGTCGGAGATGACATACATTAC
ATAGAGACCTTCAGCTAGTGGAGTCAGTGGAGGGACGTACTTGTAGATGAAATGTTTAGTGACTGGGAGTTGTGTAACCAGTAG
mRNA sequenceShow/hide mRNA sequence
GGCAACATATTTTGGCATGATTCATGTGTTAGACCTAGTGTGTCGGGAAAGTACGAGAATGAACCGAAGATGTTTTGCCATTTTGTGCCATCTACTAAGGACCATCGTTG
GATTAACATCGACGGAAGTCGTCGATGTTGAGGAGATGGTGGTGATGTTCCTCCACATCCTTGCACATGACATGAAAAATCGTGTGATTCAAAGAGAATTCATGCAGTCG
AGTGAGACAATATCACGTCATTTCAACATGGTGCTGCTTGCAGTCATTCGCTTGGATGATGAGCTGTTGAAAAACCACTACCATCATACGTTGCAAAATTGTCTTGGTGC
ATTAGATGACACCGGGTTTGATAAAGAACACAAAAGGGCGAAGTGGCCACAAATGTCCTTGGTGTATGTGACAAAAAGGGATTTTGTATTCATATTATCTGGTTGGAAAG
GATCAGCTGCAGACTCGGGCATCCTTCGAGATGCCATTTCAAGACCGAACGGACCGAGGGTGCCAAAGGACTATTACTACCTAGTCGATGACGAGTACCCAAATGTTGAA
GGTTTTCTAGCACTGTACAGAGGGCAACACTACCACTTGCAGGACTGACGTGGCGTTGAGAATGCACCGTCAACATTGAAAGAGTTCTTCAATATGAAGCATTCTTTTGC
AAGAAATGTAATTGAAAGAGCATTCGACGTCTTGAAGAGTCAATGGGCAATACCACAAGGAAAGTTGTACTACCCTGTAGAAGTCCAATGTCGGACGATACTCGCATGTT
GTCTTCTGCACAACCTCATCAATAGAGAAATGACGAACTTCGATATACCCGACGACGTAAATGAGGGTGATTCAACCCACGCGACTACTGTCGGAGATGACATACATTAC
ATAGAGACCTTCAGCTAGTGGAGTCAGTGGAGGGACGTACTTGTAGATGAAATGTTTAGTGACTGGGAGTTGTGTAACCAGTAG
Protein sequenceShow/hide protein sequence
GNIFWHDSCVRPSVSGKYENEPKMFCHFVPSTKDHRWINIDGSRRCGDGGDVPPHPCT*HEKSCDSKRIHAVEDNITSFQHGAACSHSLG**AVEKPLPSYVAKLSWCIR
*HRV**RTQKGEVATNVLGVCDKKGFCIHIIWLERISCRLGHPSRCHFKTERTEGAKGLLLPSRRVPKCRFSSTVQRATLPLAGLTWR*ECTVNIERVLQYEAFFCKKCN
*KSIRRLEESMGNTTRKVVLPCRSPMSDDTRMLSSAQPHQRNDELRYTRRRK*G*FNPRDYCRR*HTLHRDLQLVESVEGRTCRNV**LGVV*PVX