; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ChyUNG231000 (gene) of Cucumber (hystrix) v1 genome

Gene IDChyUNG231000
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSm domain-containing protein
Genome locationscaffold34_size1410443:664308..664744
RNA-Seq ExpressionChyUNG231000
SyntenyChyUNG231000
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]1.01e-6995.5Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]2.19e-7398.2Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQDGSNVESNPESLDH+GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]1.67e-6893.69Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQ G NVESNP+SLD VGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]2.88e-6994.59Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQ GSNVESNP+SLD VGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]2.37e-6892.79Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ES GSMVQDGSNVESNPESLD VGKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDE+LALLS
Subjt:  STIDEQLALLS

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein2.2e-5598.2Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQDGSNVESNPESLDH+GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

A0A1S3BAH4 uncharacterized protein LOC1034877841.4e-5295.5Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 21.4e-5295.5Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQDGSN ESN ESLD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

A0A6J1EKG3 uncharacterized protein LOC1114341491.1e-5193.69Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        ME+ESGGSMVQ G NVESNP+SLD VGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

A0A6J1KMW6 uncharacterized protein LOC1114956149.7e-5191.89Show/hide
Query:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M++ESGGSMVQ GSNVESNP+SLD VGKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLS
        STIDEQLALLS
Subjt:  STIDEQLALLS

SwissProt top hitse value%identityAlignment
A2BIG9 N-alpha-acetyltransferase 38, NatC auxiliary subunit7.8e-0539.19Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS
        K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL +IP    VS  V++
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS

A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit6.0e-0535.71Show/hide
Query:  ESGGSMVQDGSNVESNPESLDHV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  ESGGSMVQDGSNVESNPESLDHV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B6.4e-0737.08Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLALLSKTSK
        K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+ A L+ TSK
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLALLSKTSK

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit3.5e-0536.73Show/hide
Query:  ESGGSMVQDGSNVESNPESLDHV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  ESGGSMVQDGSNVESNPESLDHV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q6NU60 N-alpha-acetyltransferase 38-B, NatC auxiliary subunit3.0e-0437.93Show/hide
Query:  SNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+VES  ++  H  K+  LL R M I + DGR  +G F C D+  N+IL  A E+      S    E R LGL ++P    VS  V+
Subjt:  SNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein5.5e-3875.27Show/hide
Query:  SNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
        S     D + ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+
Subjt:  SNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACGAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACGTAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTAGATAGTACCATTGATGAACAATTGGCATTGCTA
TCAAAAACTTCTAAAACATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACGAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACGTAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTAGATAGTACCATTGATGAACAATTGGCATTGCTA
TCAAAAACTTCTAAAACATCGTGA
Protein sequenceShow/hide protein sequence
MERESGGSMVQDGSNVESNPESLDHVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SKTSKTS