CuGenDBv2

Gene ID	ChyUNG234330
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	scaffold44_size100468:24206..24640
RNA-Seq Expression	ChyUNG234330
Synteny	ChyUNG234330
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007080 - RNA polymerase Rpb1, domain 1 IPR044893 - RNA polymerase Rpb1, clamp domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5949346.1 hypothetical protein HYC85_011339 [Camellia sinensis]

4.77e-104

96.55

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKR+PSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

MBY3555948.1 hypothetical protein [Modestobacter lapidis]

2.64e-104

96.55

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSR+R
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

QDH07807.1 RpoC1 [Cucumis sativus]

1.71e-105

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

WP_222050809.1 hypothetical protein [Modestobacter lapidis]

3.36e-104

96.55

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSR+R
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

YP_009346476.1 RNA polymerase beta [Cucumis x hytivus]

1.16e-107

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE65 DNA-directed RNA polymerase subunit gamma

1.5e-82

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

A0A249RZJ2 DNA-directed RNA polymerase subunit beta'

1.5e-82

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

A0A286NFS7 DNA-directed RNA polymerase subunit beta'

1.5e-82

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

A0A6M3RTX9 DNA-directed RNA polymerase subunit beta'

1.5e-82

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

A0A6M3S6B8 DNA-directed RNA polymerase subunit beta'

1.5e-82

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

SwissProt top hits

e value

%identity

Alignment

A4QK09 DNA-directed RNA polymerase subunit beta'

4.3e-82

95.83

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KEDSKFCEQCGVEF+DSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
        RYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD

A6MM27 DNA-directed RNA polymerase subunit beta'

1.9e-82

96.53

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANK LPNGEIVGEVTKPYTFHYKTNKPE+DGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
        RYQMGYIKLACPVTHVWYLKR+PSYIANLLDKPLKELEGLVYCD
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD

A6MMB3 DNA-directed RNA polymerase subunit beta'

2.5e-82

96.55

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQI+AWANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

B1A926 DNA-directed RNA polymerase subunit beta'

1.1e-82

97.22

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD

Q4VZP2 DNA-directed RNA polymerase subunit beta'

9.3e-85

100

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

9.0e-83

95.83

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
        RYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACTCTACCTAATGGCGAGATAGTTGGA
GAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCT
TGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGC
TATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTAAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTA
GTATATTGCGATGTG

mRNA sequence

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Protein sequence

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MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMG
YIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV

ChyUNG234330 (gene) of Cucumber (hystrix) v1 genome