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ClCG00G000180 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG00G000180
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionF-box protein SKIP23-like
Genome locationCG_Chr00:213889..214223
RNA-Seq ExpressionClCG00G000180
SyntenyClCG00G000180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046890.1 F-box protein SKIP23-like [Cucumis melo var. makuwa]2.0e-2474.68Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +   R CKSWNFIALRHKHQRSLITSN SQLPMLIV S YDS +KQHCLY++TNNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

KGN56200.1 hypothetical protein Csa_011053 [Cucumis sativus]2.1e-2168.35Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

XP_004149310.1 uncharacterized protein LOC101210708 [Cucumis sativus]2.1e-2168.35Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

XP_008449178.1 PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo]2.7e-2165.82Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNF+ALRHKHQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I    F F FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

XP_008467027.1 PREDICTED: F-box protein SKIP23-like, partial [Cucumis melo]5.8e-2473.42Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +   R CKSWNFIALRHKHQRSLITSN SQLP+LIV S YDS +KQHCLY++TNNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

TrEMBL top hitse value%identityAlignment
A0A0A0L2J8 DUF295 domain-containing protein1.0e-2168.35Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

A0A1S3BM31 uncharacterized protein LOC1034911291.3e-2165.82Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNF+ALRHKHQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I    F F FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

A0A1S3CSK2 F-box protein SKIP23-like2.8e-2473.42Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +   R CKSWNFIALRHKHQRSLITSN SQLP+LIV S YDS +KQHCLY++TNNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

A0A5A7TUR9 F-box protein SKIP23-like9.6e-2574.68Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +   R CKSWNFIALRHKHQRSLITSN SQLPMLIV S YDS +KQHCLY++TNNEI  V F+  FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

A0A5D3D7D4 F-box protein SKIP23-like4.2e-2064.56Show/hide
Query:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG
        YD +     CKSWNF+ALRH+HQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I    F F FNKRCC SSFG
Subjt:  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTACAACATGGATTGTTTGGAGTCTGGAGATTGGTCTAACACTTGAATACGATACGATGTCCTTGGTCCGGGCATGTAAGTCTTGGAATTTTATTGCATTACGCCACAA
GCACCAACGATCCCTAATTACTTCTAACATTTCTCAACTTCCCATGCTCATTGTTACCTCAACATATGATAGTGATCAGAAGCAACATTGTCTTTACAATGTCACGAACA
ATGAAATTTGCCGTGTACACTTCATATTTCCCTTCAACAAAAGGTGTTGTAGTTCATCTTTCGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATTACAACATGGATTGTTTGGAGTCTGGAGATTGGTCTAACACTTGAATACGATACGATGTCCTTGGTCCGGGCATGTAAGTCTTGGAATTTTATTGCATTACGCCACAA
GCACCAACGATCCCTAATTACTTCTAACATTTCTCAACTTCCCATGCTCATTGTTACCTCAACATATGATAGTGATCAGAAGCAACATTGTCTTTACAATGTCACGAACA
ATGAAATTTGCCGTGTACACTTCATATTTCCCTTCAACAAAAGGTGTTGTAGTTCATCTTTCGGTTGA
Protein sequenceShow/hide protein sequence
ITTWIVWSLEIGLTLEYDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFG