; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG00G004330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG00G004330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr00:10058852..10064794
RNA-Seq ExpressionClCG00G004330
SyntenyClCG00G004330
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45635.1 hypothetical protein Csa_005498 [Cucumis sativus]3.4e-4060.96Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S     L LIRKF +   V  + GNID  TFVSIDSQQFR VVT   DYFV +  T SHV FS E+KE +F RE GECI+ G+ +G  TEF  PI
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP+H+FYNITF+++RVW FK+ D  GT IVAPVGLFA+FVIYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

TYK02995.1 hypothetical protein E5676_scaffold46G00840 [Cucumis melo var. makuwa]2.3e-4162.33Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S     L LIRKF +M  V  + GNID  TFVSIDSQQFRHVV    DYFV + PT SHV FS E+ E +F RE GECI+ G+ +G  TEF  PI
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP+H+FYNITF+S+RVW FK+ D  GT IVAPVGLFA+FVIYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

XP_031737295.1 uncharacterized protein LOC101209763 [Cucumis sativus]1.4e-4161.48Show/hide
Query:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF
        L LIRKFG+   V  +FGN+DF  FVSIDS QFRH++ E  DY V + PT SHV F  EVKEI+F++E+GECII G+ +G   EF  P+YP+H++YNITF
Subjt:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF

Query:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        Q++RVW FK+ D  GT I+APVGLFAQF IYFPLG
Subjt:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

XP_031744101.1 uncharacterized protein LOC116404781 [Cucumis sativus]3.4e-4060.96Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S     L LIRKF +   V  + GNID  TFVSIDSQQFR VVT   DYFV +  T SHV FS E+KE +F RE GECI+ G+ +G  TEF  PI
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP+H+FYNITF+++RVW FK+ D  GT IVAPVGLFA+FVIYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

XP_038906674.1 uncharacterized protein LOC120092605 [Benincasa hispida]2.0e-4561.64Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S  +  + LIRKFG+M  V  + GNID  TFVSIDS+QFRHV+TE  DYFV + PT SHV FS E+KE +F +E GECII G+ +G  TEF  P+
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP ++FYNITFQ+ER+W FK++D RGT+I+APVGLFAQF+IYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

TrEMBL top hitse value%identityAlignment
A0A0A0K7E0 Uncharacterized protein1.6e-4060.96Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S     L LIRKF +   V  + GNID  TFVSIDSQQFR VVT   DYFV +  T SHV FS E+KE +F RE GECI+ G+ +G  TEF  PI
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP+H+FYNITF+++RVW FK+ D  GT IVAPVGLFA+FVIYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

A0A0A0LLD1 Uncharacterized protein6.6e-4261.48Show/hide
Query:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF
        L LIRKFG+   V  +FGN+DF  FVSIDS QFRH++ E  DY V + PT SHV F  EVKEI+F++E+GECII G+ +G   EF  P+YP+H++YNITF
Subjt:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF

Query:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        Q++RVW FK+ D  GT I+APVGLFAQF IYFPLG
Subjt:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

A0A1S3C5S9 uncharacterized protein LOC1034969874.7e-4060Show/hide
Query:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF
        L LIRKF +   V  +FGN+DF  FVSIDS QFRH++ E  DY V + PT SHV F  EVKE +F +E GECII G+ +G   EF  P+YP+H++YNITF
Subjt:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF

Query:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        Q++RVW FK+ D  GT I+APVGLFAQF IYFPLG
Subjt:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

A0A5D3BV70 Uncharacterized protein1.1e-4162.33Show/hide
Query:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI
        L L+ S     L LIRKF +M  V  + GNID  TFVSIDSQQFRHVV    DYFV + PT SHV FS E+ E +F RE GECI+ G+ +G  TEF  PI
Subjt:  LALQLSPNFFALTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPI

Query:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        YP+H+FYNITF+S+RVW FK+ D  GT IVAPVGLFA+FVIYFPLG
Subjt:  YPSHIFYNITFQSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

A0A5D3CM59 Uncharacterized protein4.7e-4060Show/hide
Query:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF
        L LIRKF +   V  +FGN+DF  FVSIDS QFRH++ E  DY V + PT SHV F  EVKE +F +E GECII G+ +G   EF  P+YP+H++YNITF
Subjt:  LTLIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITF

Query:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG
        Q++RVW FK+ D  GT I+APVGLFAQF IYFPLG
Subjt:  QSERVWFFKTTDGRGTLIVAPVGLFAQFVIYFPLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTATCAAGCTCCAGAATCTTGCTCCTCTTTTGAAGGCAACTTCTATATTCACTCAACTTGCTAACGATGAAGTCTGCCTGAAATTCTCGCCGTCGATG
TTCTCGATAACTGCTCAGTTCCAGTCCCCTCCCTTCATTGCGATGATGCTTATGGATCAGCCATTTTTCGCCAACTATTCCATTGATCAGAATCAGATTTCAAAG
ATTTCCCTCCAAACCTTCCACAATGCTTTATCGCAAGGCCAAAGGTTTTGTACAATGACCATCCATCTACTGGAACCCCTAAATCGCATACTCCTTAGATTTGAG
CCTTCAAGTCATTTGGCACCATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTTCCGAAATAAATCCAAAAAATTTCTGTATTGGTTCA
CAAATGTTTAAACGTATTCTTACAACATTTTCTGTCAATGATGAACAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTC
AAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTCTGACC
TTGATTCGTAAATTTGGAATCATGCGTACTGTAAACGTGGAGTTTGGAAACATTGATTTTGGAACCTTTGTTTCAATTGATTCACAACAATTTAGACACGTTGTA
ACTGAGTTTCATGATTACTTTGTTAGTATTATTCCAACAACTTCACACGTCTTGTTCTCTATTGAAGTTAAGGAGATCGTTTTTGAAAGAGAGCAAGGAGAATGC
ATTATTGGAGGTATTAGGCAAGGGGTAAATACTGAATTCCATTTCCCTATCTATCCATCTCATATCTTTTATAATATCACTTTTCAATCGGAGAGGGTATGGTTC
TTCAAGACAACTGATGGTCGTGGTACTTTGATCGTTGCACCTGTTGGCCTCTTTGCTCAATTTGTCATCTATTTTCCTCTTGGCGGATCTGCTAAAATGAAGGAG
AAAGGACAAACGTATGAAGCAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTATCAAGCTCCAGAATCTTGCTCCTCTTTTGAAGGCAACTTCTATATTCACTCAACTTGCTAACGATGAAGTCTGCCTGAAATTCTCGCCGTCGATG
TTCTCGATAACTGCTCAGTTCCAGTCCCCTCCCTTCATTGCGATGATGCTTATGGATCAGCCATTTTTCGCCAACTATTCCATTGATCAGAATCAGATTTCAAAG
ATTTCCCTCCAAACCTTCCACAATGCTTTATCGCAAGGCCAAAGGTTTTGTACAATGACCATCCATCTACTGGAACCCCTAAATCGCATACTCCTTAGATTTGAG
CCTTCAAGTCATTTGGCACCATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTTCCGAAATAAATCCAAAAAATTTCTGTATTGGTTCA
CAAATGTTTAAACGTATTCTTACAACATTTTCTGTCAATGATGAACAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTC
AAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTCTGACC
TTGATTCGTAAATTTGGAATCATGCGTACTGTAAACGTGGAGTTTGGAAACATTGATTTTGGAACCTTTGTTTCAATTGATTCACAACAATTTAGACACGTTGTA
ACTGAGTTTCATGATTACTTTGTTAGTATTATTCCAACAACTTCACACGTCTTGTTCTCTATTGAAGTTAAGGAGATCGTTTTTGAAAGAGAGCAAGGAGAATGC
ATTATTGGAGGTATTAGGCAAGGGGTAAATACTGAATTCCATTTCCCTATCTATCCATCTCATATCTTTTATAATATCACTTTTCAATCGGAGAGGGTATGGTTC
TTCAAGACAACTGATGGTCGTGGTACTTTGATCGTTGCACCTGTTGGCCTCTTTGCTCAATTTGTCATCTATTTTCCTCTTGGCGGATCTGCTAAAATGAAGGAG
AAAGGACAAACGTATGAAGCAGAGTGA
Protein sequenceShow/hide protein sequence
MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFANYSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFE
PSSHLAPLLHHELTILPMEDWSPSEINPKNFCIGSQMFKRILTTFSVNDEQLHDFVDAISVLAETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFFALT
LIRKFGIMRTVNVEFGNIDFGTFVSIDSQQFRHVVTEFHDYFVSIIPTTSHVLFSIEVKEIVFEREQGECIIGGIRQGVNTEFHFPIYPSHIFYNITFQSERVWF
FKTTDGRGTLIVAPVGLFAQFVIYFPLGGSAKMKEKGQTYEAE