; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG00G004480 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG00G004480
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSignal sequence receptor subunit alpha
Genome locationCG_Chr00:10461665..10462007
RNA-Seq ExpressionClCG00G004480
SyntenyClCG00G004480
Gene Ontology termsGO:0005783 - endoplasmic reticulum (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9448226.1 hypothetical protein C3L33_19874, partial [Rhododendron williamsianum]1.7e-0658.82Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV
        KTKRA KVEVGTK +DAS+DEWL+      F   G C++SVIV+QI+++EV
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV

KAF1899664.1 hypothetical protein Lal_00019794 [Lupinus albus]5.8e-0761.54Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD
        KTKRAPKVEVGT+++DASLDEWL+          G C++SV  KQIKE+EVD
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD

KAF8405374.1 hypothetical protein HHK36_010278 [Tetracentron sinense]2.4e-0860.34Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVDHTFFCL
        KTKRAPKVEVGT  +DAS+DEWL+      FD  G C+ SV V+QIKE+EV+  F CL
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVDHTFFCL

KAG5547772.1 hypothetical protein RHGRI_013459 [Rhododendron griersonianum]1.7e-0658.82Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV
        KTKRA KVEVGTK +DAS+DEWL+      F   G C++SVIV+QI+++EV
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV

KAG5547775.1 hypothetical protein RHGRI_013459 [Rhododendron griersonianum]1.7e-0658.82Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV
        KTKRA KVEVGTK +DAS+DEWL+      F   G C++SVIV+QI+++EV
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV

TrEMBL top hitse value%identityAlignment
A0A061DYJ6 Signal sequence receptor subunit alpha3.8e-0459.62Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD
        KTKRAPK+EVGT  +DASLDEWL+          G CL SV   QIKE+EVD
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD

A0A2U1NZT6 Signal sequence receptor subunit alpha6.5e-0453.85Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD
        KTKRAPKVE GT+  DAS+DEWLE          G  L S+  +Q+KE+EVD
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD

A0A6A4KJV6 Signal sequence receptor subunit alpha (Fragment)8.2e-0758.82Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV
        KTKRA KVEVGTK +DAS+DEWL+      F   G C++SVIV+QI+++EV
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEV

A0A6A5PRQ7 Signal sequence receptor subunit alpha2.8e-0761.54Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD
        KTKRAPKVEVGT+++DASLDEWL+          G C++SV  KQIKE+EVD
Subjt:  KTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G16595.1 Translocon-associated protein (TRAP), alpha subunit7.6e-0583.33Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLE
        KTKRAPKVEVGT   DAS DEWLE
Subjt:  KTKRAPKVEVGTKASDASLDEWLE

AT2G21160.1 Translocon-associated protein (TRAP), alpha subunit4.9e-0470.83Show/hide
Query:  KTKRAPKVEVGTKASDASLDEWLE
        KTK+  KVEVGT++++ASLDEWLE
Subjt:  KTKRAPKVEVGTKASDASLDEWLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTGAATGTTTTAAAACCAAGAGGGCTCCTAAAGTTGAAGTTGGAACCAAGGCCTCAGATGCTTCATTAGACGAATGGCTTGAGACTGTTATTGGTCCT
GTATTTGATAATGCAGGGTACTGCTTATTCTCGGTCATCGTCAAACAAATCAAAGAAAAAGAAGTAGATCACACTTTCTTCTGCCTTTGCGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTGAATGTTTTAAAACCAAGAGGGCTCCTAAAGTTGAAGTTGGAACCAAGGCCTCAGATGCTTCATTAGACGAATGGCTTGAGACTGTTATTGGTCCT
GTATTTGATAATGCAGGGTACTGCTTATTCTCGGTCATCGTCAAACAAATCAAAGAAAAAGAAGTAGATCACACTTTCTTCTGCCTTTGCGCTTGA
Protein sequenceShow/hide protein sequence
MAIECFKTKRAPKVEVGTKASDASLDEWLETVIGPVFDNAGYCLFSVIVKQIKEKEVDHTFFCLCA