; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG01G000100 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G000100
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionserine/arginine-rich splicing factor SR34A
Genome locationCG_Chr01:82795..89757
RNA-Seq ExpressionClCG01G000100
SyntenyClCG01G000100
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605812.1 Serine/arginine-rich splicing factor SR34A, partial [Cucurbita argyrosperma subsp. sororia]1.4e-11170.95Show/hide
Query:  APVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCR-HRFSLSRSTLLRRFLNLWYVALVTRYLYLITAWMLAILDLHFAYSASSLFGLG
        APVAV  YPL RPNPKPFVI SGRC RRI  T        E    R  RF  S   L+R+F +LW                ++    +       LF   
Subjt:  APVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCR-HRFSLSRSTLLRRFLNLWYVALVTRYLYLITAWMLAILDLHFAYSASSLFGLG

Query:  IVFSMLLRELSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRF
                   KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGGS            GGGGGRF
Subjt:  IVFSMLLRELSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRF

Query:  GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSR
        GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSR
Subjt:  GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSR

Query:  --SRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQARE
          SRSRSRSRSR+ARRNRSKSAE+SVSRSVSRSRS SPVKS+R RSKSRSGSPR+ARE
Subjt:  --SRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQARE

XP_022137780.1 serine/arginine-rich splicing factor SR34A [Momordica charantia]2.2e-11795.56Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFE+VRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGG GGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT
        VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS+SRSR+
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT

Query:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE
        ARRNRSKS ERSVSRSVSRSRSPSPVKS+RPRSKSRSGSPR+ REGSE
Subjt:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE

XP_023533513.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo]4.1e-10889.64Show/hide
Query:  LSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYR
        L +YGRILDIELKIPPRPPCYCFVEFENVRDAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGGS       GGGGGGGGGGRFGVSKRSEYR
Subjt:  LSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYR

Query:  VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRS
        VIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKY+GSPT  RSR+RSRSRSRSRSRSRS
Subjt:  VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRS

Query:  RSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
        RSR+ARRNRSKSAE+SVSRSVSRSRS SPVKS+R RSKSRSGSPR+AREGS
Subjt:  RSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

XP_023533518.1 serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo]1.9e-10890.36Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGGS       GGGGGGGGGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRSRS
        VRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKY+GSPT  RSR+RSRSRSRSRSRSRSRS
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRSRS

Query:  RTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
        R+ARRNRSKSAE+SVSRSVSRSRS SPVKS+R RSKSRSGSPR+AREGS
Subjt:  RTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

XP_038907230.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida]5.0e-11492.25Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY      GGGG GGGGG GGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT
        VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSR+
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT

Query:  ----------ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE
                  ARRNRSKSAERSVSRSVSRSRSPSPVKS+RPRSKSRSGSPRQAREGSE
Subjt:  ----------ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE

TrEMBL top hitse value%identityAlignment
A0A0A0KLR9 Uncharacterized protein5.8e-11695.67Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGSGGGGGGGGGGGGGGGGGRFGVSKRSEY
        KYGRILDIELKIPPRPPCYCFVEFE+VRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY   GG GGGGGGGGGGGGGGGGGRFGVSKRSEY
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGSGGGGGGGGGGGGGGGGGRFGVSKRSEY

Query:  RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSR
        RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA+RKLDDTEFRNPWARAYIRVKKYDGSPT  RSRSRSRSRSRSRSRSR
Subjt:  RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSR

Query:  SRSRTARRNRSKSAE-RSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE
        SRSRTARRNRSKSAE RSVSRSVSRSRSPSP+KS+RPRSKSRSGSPRQAREGSE
Subjt:  SRSRTARRNRSKSAE-RSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE

A0A6J1C7M8 serine/arginine-rich splicing factor SR34A1.1e-11795.56Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFE+VRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGG GGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT
        VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS+SRSR+
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT

Query:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE
        ARRNRSKS ERSVSRSVSRSRSPSPVKS+RPRSKSRSGSPR+ REGSE
Subjt:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE

A0A6J1H330 serine/arginine-rich splicing factor SR34A-like2.1e-10587.85Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGGS            GGGGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT
        VRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRSRSRS  
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT

Query:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
         RRNRSKSAE+SVSRSVSRSRS SPVKS+R RSKSRSGSPR+AREGS
Subjt:  ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

A0A6J1IB34 serine/arginine-rich splicing factor SR34A-like isoform X11.5e-10384.41Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY----GGSGGGGGGGGGGGGGGGGGRFGVSKRSE
        KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY    GG GGGGGGGGGGGGGGGGGRFGVSKRSE
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY----GGSGGGGGGGGGGGGGGGGGRFGVSKRSE

Query:  YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSR---------
        YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKYA+RKLDDTEFRNPWAR YIRVKKYDGSPTRSRSRSRSR         
Subjt:  YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSR---------

Query:  ----------------------SRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS
                              SRSRSRSRSRSR+AR NRSKSAERSVSRSVSRSRSPSPVKS
Subjt:  ----------------------SRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS

A0A6J1K1U7 serine/arginine-rich splicing factor SR34A-like3.2e-10687.25Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGGS            GGGGGRFGVSKRSEYRVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT----RSRSRSRSRSRSRSRSRS
        VRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA+RKLDDTEF+NPWARAYIRVKKY+GSPT    R+RSRSRSRSRSRSRSRS
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPT----RSRSRSRSRSRSRSRSRS

Query:  RSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
        RSR+A+RNRSKSAE+SVSRSVSRSRS SPVKS+R RSKSRSGSPR+AREGS
Subjt:  RSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

SwissProt top hitse value%identityAlignment
A2RVS6 Serine/arginine-rich splicing factor SR34A1.3e-8871.17Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRI+DIELK+PPRPPCYCFVEFE+ RDAEDAI+ RDGYN DGCRLRVELAHGGRG SSSDRR   GG GGGG G GGGGGGGG  RFGVS+ SE+RVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----
        VRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+RKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR     
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----

Query:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS
                 SRS++ R++ SKS  RS+SRS+S+SRSPSP K              +R RS+S S SP + REGS
Subjt:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS

F4JHI7 Serine/arginine-rich splicing factor SR34B4.7e-6262.9Show/hide
Query:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV
        SKYG ++ I+LKIPPRPP Y FVEFE+ RDA+DAI  RDGY+FDG  LRVELAHGGR  SS D R SY G     G GG GGG GGG   G S+RSEYRV
Subjt:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV

Query:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS
        +V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKYA   LDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSR RS S
Subjt:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS

Query:  RSRSRTARRNRSKSAE-RSVSRSVSRSRSPSPVKSTRPRSKSRSGSPR
        RSRSR+  R++S+S + +S+ RS ++S S SP   +R RSKSRS SPR
Subjt:  RSRSRTARRNRSKSAE-RSVSRSVSRSRSPSPVKSTRPRSKSRSGSPR

O22315 Serine/arginine-rich-splicing factor SR341.2e-6562.06Show/hide
Query:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV
        SKYG ++ I+LK+PPRPP Y FVEF++ RDAEDAI  RDGY+FDG RLRVELAHGGR  SS D R S+      GGG GGG G G GG  G S+RSE+RV
Subjt:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV

Query:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS
        +V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS
Subjt:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS

Query:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
         SRSR+  R+RS+S +   SR   RS + S  +S  PRSKSRS SPR++R  S
Subjt:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

Q7SXP4 Serine/arginine-rich splicing factor 1A9.4e-4760.87Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFG-VSKRSEYRV
        KYG I DI+LK     P + FVEFE+ RDAEDA+ ARDGY++DG RLRVE    GRG      R  +GG GGGGGGGGGGGGG   GR+G  S+RSEYRV
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFG-VSKRSEYRV

Query:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFR-NPWARAYIRVKKYDG--SP----TRSRSRSRSRSRSRS
        IV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+RKLD+T+FR +    AYIRV K DG  SP    +RSRSRSRSRSRSRS
Subjt:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFR-NPWARAYIRVKKYDG--SP----TRSRSRSRSRSRSRS

Query:  RSRSRSRTARRNRSKSAERSVSRSVSRSRS
         +RSRS + RR+R  S + S   S SRSRS
Subjt:  RSRSRSRTARRNRSKSAERSVSRSVSRSRS

Q9XFR5 Serine/arginine-rich splicing factor SR301.9e-5557.03Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYR
        KYG I+DI+LKIPPRPP Y FVEFE+ RDA+DAI  RDGY+FDGCRLRVE+AHGGR   PS     SSY  S                     S+RS+YR
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYR

Query:  VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRS-RSRSRSR---
        V+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDMKYA+RKLD TEFRN ++ AYIRV++Y+      SP  S+S RSRSRSR   
Subjt:  VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRS-RSRSRSR---

Query:  ----SRSRSRSRSRT-ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSP
            S+SRS S +R+ + R+R  S  RS+  SVSRS+S S     + RS+SRS SP
Subjt:  ----SRSRSRSRSRT-ARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSP

Arabidopsis top hitse value%identityAlignment
AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-6762.06Show/hide
Query:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV
        SKYG ++ I+LK+PPRPP Y FVEF++ RDAEDAI  RDGY+FDG RLRVELAHGGR  SS D R S+      GGG GGG G G GG  G S+RSE+RV
Subjt:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV

Query:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS
        +V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS
Subjt:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS

Query:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
         SRSR+  R+RS+S +   SR   RS + S  +S  PRSKSRS SPR++R  S
Subjt:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

AT1G02840.3 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-6762.06Show/hide
Query:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV
        SKYG ++ I+LK+PPRPP Y FVEF++ RDAEDAI  RDGY+FDG RLRVELAHGGR  SS D R S+      GGG GGG G G GG  G S+RSE+RV
Subjt:  SKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRV

Query:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS
        +V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS
Subjt:  IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRS

Query:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS
         SRSR+  R+RS+S +   SR   RS + S  +S  PRSKSRS SPR++R  S
Subjt:  RSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGS

AT3G49430.1 SER/ARG-rich protein 34A9.2e-9071.17Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRI+DIELK+PPRPPCYCFVEFE+ RDAEDAI+ RDGYN DGCRLRVELAHGGRG SSSDRR   GG GGGG G GGGGGGGG  RFGVS+ SE+RVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----
        VRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+RKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR     
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----

Query:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS
                 SRS++ R++ SKS  RS+SRS+S+SRSPSP K              +R RS+S S SP + REGS
Subjt:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS

AT3G49430.2 SER/ARG-rich protein 34A7.8e-8975.51Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRI+DIELK+PPRPPCYCFVEFE+ RDAEDAI+ RDGYN DGCRLRVELAHGGRG SSSDRR   GG GGGG G GGGGGGGG  RFGVS+ SE+RVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----
        VRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+RKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR     
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----

Query:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRP
                 SRS++ R++ SKS  RS+SRS+S+SRSPSP K   P
Subjt:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRP

AT3G49430.3 SER/ARG-rich protein 34A9.2e-9071.17Show/hide
Query:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI
        KYGRI+DIELK+PPRPPCYCFVEFE+ RDAEDAI+ RDGYN DGCRLRVELAHGGRG SSSDRR   GG GGGG G GGGGGGGG  RFGVS+ SE+RVI
Subjt:  KYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVI

Query:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----
        VRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+RKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR     
Subjt:  VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR-----

Query:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS
                 SRS++ R++ SKS  RS+SRS+S+SRSPSP K              +R RS+S S SP + REGS
Subjt:  ---------SRSRTARRNRSKSAERSVSRSVSRSRSPSPVKS-------------TRPRSKSRSGSPRQAREGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCATTTGACGAAGTTGATGGCAATAAGGTTTGTTGAATTAAATTGGGGGGACGTGATAATCGCATATTTGGAAAGAAAATTAGCTCCCTTAGTCCCGCCTCCCGC
GCCTGTGGCTGTGGTATATTATCCTCTATTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAAGGAGGATCCCCGACACACCAGCTCTTCTTTCAC
CCCTTGCTGAGCCGCAGTACTGTCGCCATCGCTTTTCACTTTCTCGCTCCACTTTACTTCGTCGGTTTCTTAATCTTTGGTATGTTGCTCTCGTTACTCGTTACTTATAT
CTAATCACTGCGTGGATGTTGGCAATCTTGGATTTACATTTTGCTTACTCAGCTTCCTCCTTATTTGGACTAGGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAA
GTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTG
ATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGT
GGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCA
GGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGA
AATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGC
CGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAG
ATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCATTTGACGAAGTTGATGGCAATAAGGTTTGTTGAATTAAATTGGGGGGACGTGATAATCGCATATTTGGAAAGAAAATTAGCTCCCTTAGTCCCGCCTCCCGC
GCCTGTGGCTGTGGTATATTATCCTCTATTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAAGGAGGATCCCCGACACACCAGCTCTTCTTTCAC
CCCTTGCTGAGCCGCAGTACTGTCGCCATCGCTTTTCACTTTCTCGCTCCACTTTACTTCGTCGGTTTCTTAATCTTTGGTATGTTGCTCTCGTTACTCGTTACTTATAT
CTAATCACTGCGTGGATGTTGGCAATCTTGGATTTACATTTTGCTTACTCAGCTTCCTCCTTATTTGGACTAGGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAA
GTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTG
ATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGT
GGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCA
GGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGA
AATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGC
CGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAG
ATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGATGCAGAGCTATGATTATATGAATGT
TTGTTATAATATCGAGGGTCCGACATTGCGTGGGAATTCATTTTAGTTTAGGACCTATGCAGACTGGTTATATGAAGAGTTGAGTTAGATGGAAAATGGTATGAGTTGTA
TGGATATTCTTTTAAATCCTTCCTACATTTCGACCTACTATCGTTTTGTTTGGAGACATTAGGTATCTGCATGCTGAAGTTACTTGCACACTGGTTTCCAACTATTTAGA
TTTTGTTTTAAAGTTCAAAATGAAAATGAAATTGTTATTAAATGGGGTTTAATGTTTTAGATCATGTAAGTAATTGGTGGA
Protein sequenceShow/hide protein sequence
MVHLTKLMAIRFVELNWGDVIIAYLERKLAPLVPPPAPVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCRHRFSLSRSTLLRRFLNLWYVALVTRYLY
LITAWMLAILDLHFAYSASSLFGLGIVFSMLLRELSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGG
GGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRS
RSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE