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ClCG01G005965 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G005965
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionE3 ubiquitin-protein ligase RHA2A
Genome locationCG_Chr01:6579358..6579807
RNA-Seq ExpressionClCG01G005965
SyntenyClCG01G005965
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032532.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-4974.48Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLL-RSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHV
        MGLQSQLNDFS  SLPLFFLSLLANF+SLL RSFLS+  PS D      DISPL  HLHLNRLLSHRY ++D  +ASDCVVCL PLSAG+ VRRLPC H+
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLL-RSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHV

Query:  FHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIA
        FHKDCLDGWLHHLNFNCPLCRSP+ L QRVP T H   LP HV+A
Subjt:  FHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIA

XP_002283507.1 PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera]1.0e-3049.7Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA-----------APPSADHRL-----PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSP
        MGLQSQLND S  S+PL  ++++AN V+ +RS L             A    D  L      L  +  L   L+LNR+ S+RY   D  +ASDCVVCL  
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA-----------APPSADHRL-----PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSP

Query:  LSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR
        L  G  VRRL CRHVFHK+C DGWL HLNFNCPLCRSPL+ D+RV LT+   R+   ++ WFSLR
Subjt:  LSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

XP_010096722.1 E3 ubiquitin-protein ligase RHA2A [Morus notabilis]6.3e-3351.23Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------ISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV
        MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         +  L   L+LNR+ S+RY+       SDCVVCLS L+ G  V
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------ISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV

Query:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR
        RRL CRHVFHKDC DGWL HLNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Subjt:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR

XP_022006424.1 E3 ubiquitin-protein ligase RHA2B [Helianthus annuus]9.7e-3453.9Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPC
        MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HHL+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPC

Query:  RHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR
         HVFHK+C DGWLHHLNFNCPLCRSP++ D+RV +TR R +   + VI WF  R
Subjt:  RHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR

XP_038707458.1 E3 ubiquitin-protein ligase RHA2A [Tripterygium wilfordii]1.0e-3049.38Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA----------APPSADHRL---PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSA
        MGLQ QLND S  S+PL  ++L+AN  + LRSFL             P   +  L    L  +  L   L+LNRL S+RY   + D  + CVVCLS L  
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA----------APPSADHRL---PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSA

Query:  GHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR
        G  VR L CRHVFHKDC DGWL HLNFNCPLCRSPL+ D+RV +TR   R+ + ++AWF +R
Subjt:  GHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

TrEMBL top hitse value%identityAlignment
A0A251SN01 Putative zinc finger, RING/FYVE/PHD-type4.7e-3453.9Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPC
        MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HHL+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPC

Query:  RHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR
         HVFHK+C DGWLHHLNFNCPLCRSP++ D+RV +TR R +   + VI WF  R
Subjt:  RHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR

A0A5J5APN9 RING-type domain-containing protein3.1e-3046.34Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA----------PPSADHRL------PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSP
        MGLQ+QLND S  S+P+  ++++AN V  LRS L A           P   D  L       L  +  +   L+LNR+ S+RY+  D    SDCVVCL  
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA----------PPSADHRL------PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSP

Query:  LSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSL
        L+ G  VR+L CRHVFHK+C DGWL HL FNCPLCRSPL+ ++RV LT    R+   ++ WFSL
Subjt:  LSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSL

A0A6A1V0Q0 E3 ubiquitin-protein ligase RHA2A4.9e-3150.6Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA------PPSADHRLP----------LPDISPLPHHLHLNRLLSHRY-AHSDHDSASDCVVCLS
        MGLQSQLND S  S+PL  LSL+AN VS LRS L           S  +R+           L  +  L   L+ NR+ S+ Y A  D     DCVVCLS
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA------PPSADHRLP----------LPDISPLPHHLHLNRLLSHRY-AHSDHDSASDCVVCLS

Query:  PLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR
         L  G  VRRLPCRHVFHK+C +GWL HLNFNCPLCRSPL+ D+RV L     R+   ++AWFSLR
Subjt:  PLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

A0A6J1BIW9 E3 ubiquitin-protein ligase RHA2A3.1e-3046.71Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISP------------------LPHHLHLNRLLSHRYAHSDHDSASDCVVCL
        MGLQSQLND S  S+PL  ++L+AN +  LR+ L     S    LP PD +P                  +   L+LN++ S+RY        SDC+VCL
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISP------------------LPHHLHLNRLLSHRYAHSDHDSASDCVVCL

Query:  SPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR
          L  G  VR+L C HVFHKDC DGWL HLNFNCPLCRSPL  DQRV + R   R+ + ++AWF LR
Subjt:  SPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

W9RAQ2 E3 ubiquitin-protein ligase RHA2A3.0e-3351.23Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------ISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV
        MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         +  L   L+LNR+ S+RY+       SDCVVCLS L+ G  V
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------ISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV

Query:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR
        RRL CRHVFHKDC DGWL HLNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Subjt:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR

SwissProt top hitse value%identityAlignment
Q8GYT9 E3 ubiquitin-protein ligase SIS36.6e-0946.3Show/hide
Query:  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD
        D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Subjt:  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO6.6e-0944Show/hide
Query:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL
        ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Subjt:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL

Q9Y252 E3 ubiquitin-protein ligase RNF66.6e-0941.18Show/hide
Query:  LNRLLSHRYAHSDHDS--ASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL
        ++ L +  Y H+  DS     C VC+S    G+ +R+LPC H FH  C+D WL   N  CP+CR P+L
Subjt:  LNRLLSHRYAHSDHDS--ASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLL

Q9ZT50 E3 ubiquitin-protein ligase RHA2A4.4e-2950.7Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS---------PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV
        MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S          L   L LNRL S+R         SDCVVCLS L  G  V
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS---------PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV

Query:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTR
        R+L CRHVFHK CL+GWLH  NF CPLCRS L+ D  V  T+
Subjt:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B1.4e-3057.26Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVF
        MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LNRL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVF
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVF

Query:  HKDCLDGWLHHLNFNCPLCRSPLL
        HK CL+GWL HLNFNCPLCRSPLL
Subjt:  HKDCLDGWLHHLNFNCPLCRSPLL

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A3.1e-3050.7Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS---------PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV
        MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S          L   L LNRL S+R         SDCVVCLS L  G  V
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS---------PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLV

Query:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTR
        R+L CRHVFHK CL+GWLH  NF CPLCRS L+ D  V  T+
Subjt:  RRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTR

AT2G01150.1 RING-H2 finger protein 2B9.7e-3257.26Show/hide
Query:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVF
        MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LNRL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVF
Subjt:  MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVF

Query:  HKDCLDGWLHHLNFNCPLCRSPLL
        HK CL+GWL HLNFNCPLCRSPLL
Subjt:  HKDCLDGWLHHLNFNCPLCRSPLL

AT2G04240.1 RING/U-box superfamily protein4.7e-1044Show/hide
Query:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL
        ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Subjt:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL

AT2G04240.2 RING/U-box superfamily protein4.7e-1044Show/hide
Query:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL
        ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Subjt:  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL

AT3G47990.1 SUGAR-INSENSITIVE 34.7e-1046.3Show/hide
Query:  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD
        D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Subjt:  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGC
CCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATT
CTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCAC
CATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTC
TCTTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGC
CCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATT
CTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCAC
CATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTC
TCTTCGATGA
Protein sequenceShow/hide protein sequence
MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLH
HLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR