CuGenDBv2

Gene ID	ClCG01G008030
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	coiled-coil domain-containing protein 1 isoform X3
Genome location	CG_Chr01:9216804..9217370
RNA-Seq Expression	ClCG01G008030
Synteny	ClCG01G008030
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-80

88.08

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ AA  RNPRPSQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS  PPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE         EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-80

89.47

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ AA  RNPRPSQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS  PPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE      EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

2.8e-78

89.53

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR S PH QSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSST PP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

XP_016903615.1 PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]

4.7e-78

89.01

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR S PH QSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSST PP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

XP_022939254.1 nucleolin [Cucurbita moschata]

9.6e-79

90.91

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD
        +KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA AA  RNPRPSQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS  PPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

2.3e-78

89.01

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR S PH QSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSST PP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

8.7e-78

89.01

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR S PH QSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSIL DDLAARFAALKASLPSST PP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.3e-78

89.53

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Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS  AAVPRNPR S PH QSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSST PP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

A0A6J1FGM0 nucleolin

4.6e-79

90.91

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD
        +KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA AA  RNPRPSQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS  PPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

6.7e-78

88.42

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA A   RNPR SQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA
        DLAARFAALKASLPSS  PPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KERRKKKA
Subjt:  DLAARFAALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKERRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

6.7e-22

43.43

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Query:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGDDLAAR
        G ++++VEQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF AL+S+            +  Q   Q       P  +++V +        +DL  R
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGDDLAAR

Query:  FAALKASLPSSTAPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR
        FAALK SLPS+++         I  D D   E+ EV+KLIQWA DAARLDPSP S  DD++ +   SD++ D  R
Subjt:  FAALKASLPSSTAPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR

Sequences

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CDS sequence

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ATGGATTCGAGAAAGAAGATGGGAAGAGGCAACGACGACGAGCAAGTCGAGCAATTGCTGCAAGCAGCTCAAGACGATCTCATGCTGAAATTGAGCGTCGATTCACACAT
GTCTCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCACCGCCGCCGTTCCCCGCAATCCTCGCCCTT
CTCAGCCGCATACTCAATCCGATTCCTCGTCCCGACCGCCGCCGATTGAAAACCTTGTCGTCGATGGCGAGTCTCAATCGATTCTCGGTGACGATCTCGCTGCTAGATTC
GCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACCGCGCCGCCTCCGTCGTCGATACCTAATGATGTCGATAGCGACGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTG
GGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGACGAAGAGGAGTTCACTAGTTCCGATGAAGACGTCGACGATCGGAGAAAAGAGCGTC
GGAAAAAGAAGGCCTGA

mRNA sequence

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Protein sequence

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MDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSATAAVPRNPRPSQPHTQSDSSSRPPPIENLVVDGESQSILGDDLAARF
AALKASLPSSTAPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKERRKKKA

ClCG01G008030 (gene) of Watermelon (Charleston Gray) v2.5 genome