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ClCG01G009190 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G009190
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase
Genome locationCG_Chr01:11877887..11879192
RNA-Seq ExpressionClCG01G009190
SyntenyClCG01G009190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON94567.1 LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_096020 [Trema orientale]1.0e-2557.58Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP +E K    HLRY FLGESST PVIIS+ LNE    KLLRVL+ H               PSI MHKIL++D+Y PSIEH+RRLNP MKEVV+AEVLK
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKT
        LL+A IIY I D   VS VQ+    PK+G  T
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKT

XP_022843127.1 uncharacterized protein LOC111366646 [Olea europaea var. sylvestris]4.8e-2350.36Show/hide
Query:  EHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVV
        + +S+    +E K    HLRY FLG++S +PVIISS LN   E KLL+VL++H               P++ MHKIL++DSY PSIEH+RRLNP MKEVV
Subjt:  EHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVV

Query:  KAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKTT
         ++VLKLL A II+AI D   VS VQI +  P++  KTT
Subjt:  KAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKTT

XP_022865871.1 uncharacterized protein LOC111385680 [Olea europaea var. sylvestris]1.6e-2355.04Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP +E K  S HLRY +LGE ST PVIISS ++EV E KLLRVL+E+               PSI MHKIL+++ + PSI+ +RRLNP MKEVV+AEVLK
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEG
        LLNA IIY I D   +S VQ+    PK+G
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEG

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]9.7e-2451.43Show/hide
Query:  VSEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKE
        +S  K     T E K    HLRY FLG+S T+PVI+++ L    E +LLRVL+EH               PSI MHKIL+++ Y PSIEH+RRLNP MKE
Subjt:  VSEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKE

Query:  VVKAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKT
        VV+AE+LKLLNA IIYAI D   VS VQ+    PK+G  T
Subjt:  VVKAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKT

XP_024022388.1 uncharacterized protein LOC112091888 [Morus notabilis]1.6e-2352.52Show/hide
Query:  SEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEV
        SE K+ T   +  K    HLRY+FLG +ST PVIIS+ L+E  E KL+ VL+ +               P+I MHKIL++DSY P IEH+RR+NP MKEV
Subjt:  SEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEV

Query:  VKAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKT
        V+AEVLKLLNA IIYAIYD   VS VQ+    PK+G  T
Subjt:  VKAEVLKLLNARIIYAIYDCFLVSLVQINLFNPKEGVKT

TrEMBL top hitse value%identityAlignment
A0A1R3FZW6 Reverse transcriptase8.8e-2352.71Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP  E K    HLRYVFLGES+TY VIISS L+ V E K++RVL++H               PS+ MHKIL+++++  S+EH+RRLNP MK+VV+ EVLK
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEG
        LL+A IIYAI D   VS VQ+    PK+G
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEG

A0A1R3GXK0 Reverse transcriptase4.0e-2352.71Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP +E +    HLRYVFLGES+TY VIISS L+ V E K++RVL++H               PS+ MHKIL++++  PS+EH+RRLNP MK+VV+ EVLK
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEG
        LL+A IIYAI D   VS VQ+    PK+G
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEG

A0A2P5F9V5 Uncharacterized protein5.0e-2657.58Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP +E K    HLRY FLGESST PVIIS+ LNE    KLLRVL+ H               PSI MHKIL++D+Y PSIEH+RRLNP MKEVV+AEVLK
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKT
        LL+A IIY I D   VS VQ+    PK+G  T
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKT

A0A438FL41 Integrase catalytic domain-containing protein1.5e-2248.61Show/hide
Query:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK
        PP +E K    HL+Y FL +SS YP+II+S LN + E KLLRVL+EH               PSI MHKIL  +SY P ++ +RRLNP+M+EVVK EV+K
Subjt:  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLK

Query:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKTTNITLFRRVVEM
        LL+A IIY I DC  VS VQ+    PK+G + T I + R  +++
Subjt:  LLNARIIYAIYDCFLVSLVQINLFNPKEGVKTTNITLFRRVVEM

A0A6P5U2U9 uncharacterized protein LOC1107742421.5e-2251.56Show/hide
Query:  PTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKL
        PT+  K    HLRY +LG S T PVII++ L+++ E KLLRVL+EH               PS+ MH+IL++D++ PS+EH+RRLNP MKEVV+AEVLKL
Subjt:  PTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH--------------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKL

Query:  LNARIIYAIYDCFLVSLVQINLFNPKEG
        L+A IIY I D   VS VQ+    PK+G
Subjt:  LNARIIYAIYDCFLVSLVQINLFNPKEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGAGTGAACATAAATCGAACACACCACCCACTGTGGAATCAAAAGACTCATCTGTGCATTTAAGATATGTCTTTCTAGGAGAGTCTTCTACTTATCCAGTCAT
AATTTCTTCAAAATTGAATGAAGTATACGAGGCAAAATTATTAAGAGTCTTGCAGGAGCATGATCCATCTATTGTGATGCACAAAATACTAGTGGATGATTCCTATAGTC
CTTCAATTGAGCATCGGAGAAGGCTTAATCCGACAATGAAAGAGGTAGTAAAGGCCGAAGTTCTTAAATTGCTAAATGCAAGAATTATTTATGCTATATATGATTGTTTC
TTGGTGAGTCTAGTGCAGATTAATCTCTTTAACCCAAAAGAAGGTGTAAAGACAACAAACATCACCCTTTTTAGGCGGGTAGTTGAGATGGGAAGTAGCCAAGAGCCTTG
TTATGAAATAATCGAGTGGTGTATTATAGGTACCTTGAGTAGTCGAGCCACCAAAAGTGTGAGTGATGCGGGCTTAGAGGATGGGCTGAAGGATGCGTCTTTCTTAGTGA
AGGATGCGTCCATAGTGAGTTGGTTGAAGGCTTTTGACGCATTGCTTGATGGGCAAGTTGGGCTAGGCGTCCATGGCTTGGATGCGTTGGTTGAGGTAGTAAGAGGGCAT
GGTACATTGAGGCTATACGTCCAAGGAAGGCTTGTGAGGCTGAAGCATGGGGCAATGCGTCCAAGTCAACAACCATCAGCCAAGGGCCAAGCTAAACCAGTGGCCGAAAG
AGGTGGGCTAACACGCTTCCGGCTATGCGACCATGCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGAGTGAACATAAATCGAACACACCACCCACTGTGGAATCAAAAGACTCATCTGTGCATTTAAGATATGTCTTTCTAGGAGAGTCTTCTACTTATCCAGTCAT
AATTTCTTCAAAATTGAATGAAGTATACGAGGCAAAATTATTAAGAGTCTTGCAGGAGCATGATCCATCTATTGTGATGCACAAAATACTAGTGGATGATTCCTATAGTC
CTTCAATTGAGCATCGGAGAAGGCTTAATCCGACAATGAAAGAGGTAGTAAAGGCCGAAGTTCTTAAATTGCTAAATGCAAGAATTATTTATGCTATATATGATTGTTTC
TTGGTGAGTCTAGTGCAGATTAATCTCTTTAACCCAAAAGAAGGTGTAAAGACAACAAACATCACCCTTTTTAGGCGGGTAGTTGAGATGGGAAGTAGCCAAGAGCCTTG
TTATGAAATAATCGAGTGGTGTATTATAGGTACCTTGAGTAGTCGAGCCACCAAAAGTGTGAGTGATGCGGGCTTAGAGGATGGGCTGAAGGATGCGTCTTTCTTAGTGA
AGGATGCGTCCATAGTGAGTTGGTTGAAGGCTTTTGACGCATTGCTTGATGGGCAAGTTGGGCTAGGCGTCCATGGCTTGGATGCGTTGGTTGAGGTAGTAAGAGGGCAT
GGTACATTGAGGCTATACGTCCAAGGAAGGCTTGTGAGGCTGAAGCATGGGGCAATGCGTCCAAGTCAACAACCATCAGCCAAGGGCCAAGCTAAACCAGTGGCCGAAAG
AGGTGGGCTAACACGCTTCCGGCTATGCGACCATGCATGCTGA
Protein sequenceShow/hide protein sequence
MSVSEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEHDPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDCF
LVSLVQINLFNPKEGVKTTNITLFRRVVEMGSSQEPCYEIIEWCIIGTLSSRATKSVSDAGLEDGLKDASFLVKDASIVSWLKAFDALLDGQVGLGVHGLDALVEVVRGH
GTLRLYVQGRLVRLKHGAMRPSQQPSAKGQAKPVAERGGLTRFRLCDHAC