CuGenDBv2

Gene ID	ClCG01G009300
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ribonuclease H2 subunit C
Genome location	CG_Chr01:12801990..12805877
RNA-Seq Expression	ClCG01G009300
Synteny	ClCG01G009300
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-67

70.15

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++ENERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSV+ YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

1.2e-68

70.35

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC V+HYFKPKST           G+EVDGL +EEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

5.2e-67

69.65

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSV+ YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

3.0e-67

69.65

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSV+ YFKPKST           G+EVDGL+V+ AYFRGRKLQGATISLPEGY     
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

5.9e-71

73.63

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        MN ENERKGEV VDFDF SDSVALDLSGKVHQLPCAIKFDGPCSV+ YFKPKST           G+E DGL+VEEAYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYVLG+KSL    ASE  Q+SSPWQVKAKF NITYWNHDTLPSQDD FQRSFHWLTVAQALHKPVTAEDLASASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

5.9e-69

70.35

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC V+HYFKPKST           G+EVDGL +EEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

A0A1S3C9A8 uncharacterized protein C12B10.15c

2.1e-66

67.98

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC V+HYFKPKST           G+EVDGL VEEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

2.1e-66

67.98

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC V+HYFKPKST           G+EVDGL VEEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A6J1EN41 uncharacterized protein C12B10.15c

2.5e-67

69.65

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSV+ YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

A0A6J1KH29 uncharacterized protein C12B10.15c

1.5e-67

69.65

Show/hide

Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSV+ YFKPKST           G+EVDGL+V+ AYFRGRKLQGATISLPEGY     
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

1.7e-04

26.35

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Query:  KVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS
        K   LPC I +DGP  V  YF  K  +S             +  +      RGR+L G  + LPE Y+         G     +    N +T        
Subjt:  KVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS

Query:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA
          SE     S W + + FE +  WN D +  S+ D ++R    W+  A
Subjt:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

2.0e-05

23.78

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Query:  VHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN
        +H LPC +  DGP  V  +F P        +    EG+EV         FRGR L+G  +++P G             S+ +P  +         ++ L 
Subjt:  VHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN

Query:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV
         D    +G                  A F   T W  +T+P  D   + +  W ++A A+H  V
Subjt:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

3.8e-44

51.35

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Query:  TVDFDFGSDSVAL-DLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKS
        T+DF   +D  ++ DLS +VHQLPC I+FDGP  V+HYFKPKS+            +E+DG+  EEA+FRGRKLQGATISLP GYS       G+   ++
Subjt:  TVDFDFGSDSVAL-DLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKS

Query:  SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKN
        SN   LN +       K  AS   +D+  W+VKAKF N+TYWNHD+LPS+DD F RSFHW ++A+ALHKPV  EDL + S   KN
Subjt:  SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

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ATGAATACTGAAAACGAGAGGAAAGGGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGT
GCAATTAAATTCGATGGTCCTTGCTCTGTTGCTCATTATTTTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGAT
GGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTAT
GGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGG
CAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAA
GCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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AAAAGAAAACGAATTTCGAGCGGGAAAATCTTGGTCGACGATCCATTCTCATTTCTCAGTGCTCAAAAGAGCGGCAAGTGTAGAATCTGAAGTTGAAATGGTCCA
CTGAATTTCCTCGCCAGAAATCCGAAGCATCAACCTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAATTAATCAAATGAATACTGAAAACGAGAGGAAAG
GGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCT
CTGTTGCTCATTATTTTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTGTTGAGGAAGCTTATT
TCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGC
AGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACA
TTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCATTGCACAAACCTGTAACAGCAG
AAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTACAATCATGTGCACTGAGAAGAAAACTTCTAATGCTAGAATGATTCCATACTACTTTGA
TTTGTAATTGGTCACATTATTATCTATTTTACCAATTTATTCAATGGGTTTGGCATTTTAAATCATGATGTGGCTTTTTACAACAGTAATATGGAAGAATTTCAT
ACAAGAGTAGTATTAGAAATATGATTTGCATTTTTTTTTCTAAAGTCATTTAACTTCAAGAGTTGTTCGATAAAACTAACATTTGTGAAGTACAAGA

Protein sequence

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MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVAHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGY
GDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

ClCG01G009300 (gene) of Watermelon (Charleston Gray) v2.5 genome