; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG01G009600 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G009600
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCG_Chr01:13449676..13450550
RNA-Seq ExpressionClCG01G009600
SyntenyClCG01G009600
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]2.3e-1630.64Show/hide
Query:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNY
        PP       NP+ S+ + N  P   L T P   +        P++ QPL+VKL+D N+++ K QLLN V+ANGLE FL  + +C P+FL+  Q Q NP +
Subjt:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNY

Query:  TTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHIL
         +W R   L++++                                                                      +IGEP++Y  DHL + L
Subjt:  TTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHIL

Query:  DGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA
         GL  +YN FVTSIQ++   PS+E+V SLLL+Y+A
Subjt:  DGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]4.7e-1429.39Show/hide
Query:  NPVLSTP---LQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRL
        NP +  P   + NV      A PP   LP       P++ QP ++KL+  N+L+ KNQLLN ++ANGLE F+  +  C P+F + A+  +N  Y  W R 
Subjt:  NPVLSTP---LQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRL

Query:  RMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSE
          L++++                                                                       +GEP+S + DHL ++  GL  E
Subjt:  RMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSE

Query:  YNAFVTSIQNRTDNPSLEDVRSLLLAYE
        YNAFVTSI  R DN  LE++ SLLL+YE
Subjt:  YNAFVTSIQNRTDNPSLEDVRSLLLAYE

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.6e-1633.85Show/hide
Query:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF-----------------------------
        P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  W RL  L++++                             
Subjt:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF-----------------------------

Query:  -----------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE
                                                 TIGEP+SYR D L  IL+GL  EY+ FVTSI NR+D PSL++V SLL  YE
Subjt:  -----------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE

RVX04814.1 hypothetical protein CK203_024917 [Vitis vinifera]2.9e-1642.28Show/hide
Query:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVT
        P+L QPLS+KL++TN LL  NQL+N ++ANGLE F+  +    P++L+ A+ Q+NP +  W RL                 + L  I +GL  +Y++FVT
Subjt:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVT

Query:  SIQNRTDNPSLEDVRSLLLAYEA
        SI NR D PS ++V SLL  YE+
Subjt:  SIQNRTDNPSLEDVRSLLLAYEA

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.9e-3145.62Show/hide
Query:  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF-----
        +PP    TP F   P  PF A   PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L  TIM  PQFL+H Q Q NP Y  W R   LL+ +     
Subjt:  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF-----

Query:  -----------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRT
                                                                          +GEP+SYR DHLAH+LDGL SEYNAFVTSI NR 
Subjt:  -----------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRT

Query:  DNPSLEDVRSLLLAYEA
        D+PSLEDVRSLLLAYEA
Subjt:  DNPSLEDVRSLLLAYEA

TrEMBL top hitse value%identityAlignment
A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE13.2e-1633.85Show/hide
Query:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF-----------------------------
        P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  W RL  L++++                             
Subjt:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF-----------------------------

Query:  -----------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE
                                                 TIGEP+SYR D L  IL+GL  EY+ FVTSI NR+D PSL++V SLL  YE
Subjt:  -----------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE

A0A438J785 Uncharacterized protein1.4e-1642.28Show/hide
Query:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVT
        P+L QPLS+KL++TN LL  NQL+N ++ANGLE F+  +    P++L+ A+ Q+NP +  W RL                 + L  I +GL  +Y++FVT
Subjt:  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVT

Query:  SIQNRTDNPSLEDVRSLLLAYEA
        SI NR D PS ++V SLL  YE+
Subjt:  SIQNRTDNPSLEDVRSLLLAYEA

A0A6J1DQX7 uncharacterized protein LOC1110223159.2e-3245.62Show/hide
Query:  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF-----
        +PP    TP F   P  PF A   PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L  TIM  PQFL+H Q Q NP Y  W R   LL+ +     
Subjt:  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF-----

Query:  -----------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRT
                                                                          +GEP+SYR DHLAH+LDGL SEYNAFVTSI NR 
Subjt:  -----------------------------------------------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRT

Query:  DNPSLEDVRSLLLAYEA
        D+PSLEDVRSLLLAYEA
Subjt:  DNPSLEDVRSLLLAYEA

A0A7J0EGI5 Uncharacterized protein1.1e-1630.64Show/hide
Query:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNY
        PP       NP+ S+ + N  P   L T P   +        P++ QPL+VKL+D N+++ K QLLN V+ANGLE FL  + +C P+FL+  Q Q NP +
Subjt:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNY

Query:  TTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHIL
         +W R   L++++                                                                      +IGEP++Y  DHL + L
Subjt:  TTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGDHLAHIL

Query:  DGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA
         GL  +YN FVTSIQ++   PS+E+V SLLL+Y+A
Subjt:  DGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA

A0A803NL56 Uncharacterized protein1.7e-1729.05Show/hide
Query:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQ------QLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQT
        P +    + NP+ +  + N   P   A PP         LPP  ++F     Q +SVKL+DTN+L+ + Q+ N ++ANGLEG++  T+ C  QF N   +
Subjt:  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQ------QLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQT

Query:  QLNPNYTTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGD
        Q++P +TTWHR   LL+++                                                                      ++G+PIS + +
Subjt:  QLNPNYTTWHRLRMLLINF----------------------------------------------------------------------TIGEPISYRGD

Query:  HLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA
        HL ++L+GL  EYNAFVT I  R   P++E+V +LLL+YEA
Subjt:  HLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCA
AAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATG
ATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCT
CAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATAT
TCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCA
AAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATG
ATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCT
CAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATAT
TCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTT
GA
Protein sequenceShow/hide protein sequence
MLLQCQPRLKLQLLSRIFRPPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHA
QTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA