; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG01G011330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G011330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase
Genome locationCG_Chr01:18600195..18601150
RNA-Seq ExpressionClCG01G011330
SyntenyClCG01G011330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-2239.77Show/hide
Query:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE----------------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEY
        +AQ DPE+KY I+R KAL A  F G T+P D E                                  KG EDWW++ E+R      +     R MTV +Y
Subjt:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE----------------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEY

Query:  EKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK
        EKK+T+L+KYA  +I DE ++CK F  GL  +IRTPVTT   W +F++++EAA+R +KS+   K ERE +K
Subjt:  EKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-2438.27Show/hide
Query:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFT
        +AQ DPE+KY  +R KAL A  F G T+P DVE                                EDWW++ E+R              MTVAEYEKK+T
Subjt:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFT

Query:  KLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSN
        +L+KYA  +IVDE ++CK F  GL  +IRTPVT    W +F++++E A+R +KS+   K ERE +K       ++  +R    R  S RFVP VS+
Subjt:  KLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSN

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]2.8e-2433.78Show/hide
Query:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------
        S E+ Q DPE+KY I+R KAL A  F G T+P D E                              G EDWW++ E+R      ++W             
Subjt:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------

Query:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT
                     +    MT+AEYEKK+T+L+ YA  +I DE ++CK F  GL  +IRTPVT    W +F++++EAA+R +KS+   K ERE +K     
Subjt:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT

Query:  GQALGTSREQSYRGDSRRFVPSVSN
          ++  +R+   R  S RFVP VS+
Subjt:  GQALGTSREQSYRGDSRRFVPSVSN

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.4e-2334.23Show/hide
Query:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW----------------
        +AQ DPE+KY  +R KAL A  F G T+P DVE                                EDWW++ E+R      ++W                
Subjt:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW----------------

Query:  ----------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQA
                  +    MTVAEYEKK+T+L+KYA  +IVDE ++CK F  GL  +IRTPVT    W +F++++E A+R +KS+   K ERE +K       +
Subjt:  ----------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQA

Query:  LGTSREQSYRGDSRRFVPSVSN
        +  +R    R  S RFVP VS+
Subjt:  LGTSREQSYRGDSRRFVPSVSN

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]1.3e-2134.08Show/hide
Query:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------
        S E+AQ DP++KY I+R KAL A  F G T+P DVE                              G EDWW++ E+R      ++W             
Subjt:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------

Query:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT
                     +    MTVAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R  KS+   K ERE +K     
Subjt:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT

Query:  GQALGTSREQSYRGDSRRFVPSV
          ++  +R    R  S RFVP V
Subjt:  GQALGTSREQSYRGDSRRFVPSV

TrEMBL top hitse value%identityAlignment
A0A5A7T1M0 Reverse transcriptase2.3e-2438.27Show/hide
Query:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFT
        +AQ DPE+KY  +R KAL A  F G T+P DVE                                EDWW++ E+R              MTVAEYEKK+T
Subjt:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFT

Query:  KLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSN
        +L+KYA  +IVDE ++CK F  GL  +IRTPVT    W +F++++E A+R +KS+   K ERE +K       ++  +R    R  S RFVP VS+
Subjt:  KLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSN

A0A5A7TBS0 CCHC-type domain-containing protein6.4e-2234.08Show/hide
Query:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------
        S E+AQ DP++KY I+R KAL A  F G T+P DVE                              G EDWW++ E+R      ++W             
Subjt:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------

Query:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT
                     +    MTVAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R  KS+   K ERE +K     
Subjt:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT

Query:  GQALGTSREQSYRGDSRRFVPSV
          ++  +R    R  S RFVP V
Subjt:  GQALGTSREQSYRGDSRRFVPSV

A0A5A7UZM6 Gag protease polyprotein-like protein1.4e-2433.78Show/hide
Query:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------
        S E+ Q DPE+KY I+R KAL A  F G T+P D E                              G EDWW++ E+R      ++W             
Subjt:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------

Query:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT
                     +    MT+AEYEKK+T+L+ YA  +I DE ++CK F  GL  +IRTPVT    W +F++++EAA+R +KS+   K ERE +K     
Subjt:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT

Query:  GQALGTSREQSYRGDSRRFVPSVSN
          ++  +R+   R  S RFVP VS+
Subjt:  GQALGTSREQSYRGDSRRFVPSVSN

A0A5D3CTK6 CCHC-type domain-containing protein6.4e-2234.08Show/hide
Query:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------
        S E+AQ DP++KY I+R KAL A  F G T+P DVE                              G EDWW++ E+R      ++W             
Subjt:  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE-----------------------------KGVEDWWKLIENRGNDADPLTW-------------

Query:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT
                     +    MTVAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R  KS+   K ERE +K     
Subjt:  -------------IGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRT

Query:  GQALGTSREQSYRGDSRRFVPSV
          ++  +R    R  S RFVP V
Subjt:  GQALGTSREQSYRGDSRRFVPSV

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.2e-2239.77Show/hide
Query:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE----------------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEY
        +AQ DPE+KY I+R KAL A  F G T+P D E                                  KG EDWW++ E+R      +     R MTV +Y
Subjt:  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE----------------------------------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEY

Query:  EKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK
        EKK+T+L+KYA  +I DE ++CK F  GL  +IRTPVTT   W +F++++EAA+R +KS+   K ERE +K
Subjt:  EKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGACAAACCAAACGAGGTAGGCAAGCAGACGCCGAAACATCGCATGTTATCGGTGGATTTCGAGAAGGTTCGGAGGGAGATTCTAGTAACCCTCAGTGCT
GAAACAGCTCAAGGAGATCCCGAGAGAAAGTATGAGATCAAGAGGTTCAAAGCCTTAGAAGCTCAGGTATTTGAGGGAATCACTGATCCTGAAGATGTCGAAAAA
GGAGTGGAGGATTGGTGGAAGTTGATAGAAAATAGGGGAAATGATGCAGATCCTCTAACGTGGATTGGTGCAAGGGATATGACTGTAGCTGAGTACGAAAAGAAG
TTTACAAAGCTAGCTAAGTACGCTCTAACAATGATTGTGGATGAAGCTGATAAGTGCAAGTGTTTTGTGTTAGGTTTGCATAGTAAAATCCGTACTCCAGTTACA
ACAAGTATAGTGTGGACAAACTTTGCACGAATGATTGAGGCTGCCATGAGAGCTAAAAAGAGTATAACTGGTGGGAAGCCTGAGAGGGAAGGAAATAAAGGAGAT
TATAGAACGGGACAAGCTTTGGGTACATCTCGGGAACAGTCTTACCGAGGTGATAGTAGAAGGTTTGTACCCAGTGTTTCTAACCTAGAGGTGGTGGTTCAAGAC
AAACTCAGAGGGGTTTTCCTCAGACTTTGGGACCTCCAAGTGGTTCATAGTTTAGGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGACAAACCAAACGAGGTAGGCAAGCAGACGCCGAAACATCGCATGTTATCGGTGGATTTCGAGAAGGTTCGGAGGGAGATTCTAGTAACCCTCAGTGCT
GAAACAGCTCAAGGAGATCCCGAGAGAAAGTATGAGATCAAGAGGTTCAAAGCCTTAGAAGCTCAGGTATTTGAGGGAATCACTGATCCTGAAGATGTCGAAAAA
GGAGTGGAGGATTGGTGGAAGTTGATAGAAAATAGGGGAAATGATGCAGATCCTCTAACGTGGATTGGTGCAAGGGATATGACTGTAGCTGAGTACGAAAAGAAG
TTTACAAAGCTAGCTAAGTACGCTCTAACAATGATTGTGGATGAAGCTGATAAGTGCAAGTGTTTTGTGTTAGGTTTGCATAGTAAAATCCGTACTCCAGTTACA
ACAAGTATAGTGTGGACAAACTTTGCACGAATGATTGAGGCTGCCATGAGAGCTAAAAAGAGTATAACTGGTGGGAAGCCTGAGAGGGAAGGAAATAAAGGAGAT
TATAGAACGGGACAAGCTTTGGGTACATCTCGGGAACAGTCTTACCGAGGTGATAGTAGAAGGTTTGTACCCAGTGTTTCTAACCTAGAGGTGGTGGTTCAAGAC
AAACTCAGAGGGGTTTTCCTCAGACTTTGGGACCTCCAAGTGGTTCATAGTTTAGGCAACTGA
Protein sequenceShow/hide protein sequence
MPDKPNEVGKQTPKHRMLSVDFEKVRREILVTLSAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVEKGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKK
FTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSNLEVVVQD
KLRGVFLRLWDLQVVHSLGN