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ClCG01G012120 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G012120
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr01:21936962..21937555
RNA-Seq ExpressionClCG01G012120
SyntenyClCG01G012120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-0550Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     + K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
KAA0047098.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0550Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     ++K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
KAA0056929.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.7e-0655.56Show/hide
Query:  WKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        W+RLI AKY   FVGD PT   F STKSPW  I++G DWF  +++
Subjt:  WKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
TYK05764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-0546.81Show/hide
Query:  PPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        P WKR I  KY+ +  GDIP  S + S++SPW S+++GLDWF++ ++
Subjt:  PPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]1.9e-0550Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     ++K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
TrEMBL top hitse value%identityAlignment
A0A1S3BGD2 uncharacterized protein LOC1034895309.4e-0650Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     ++K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein1.6e-0550Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     + K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
A0A5D3C104 LINE-1 retrotransposable element ORF2 protein9.4e-0650Show/hide
Query:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        N  W+RLI  KYK N+ GDIP+     ++K+PW SI+  +DWFK+N S
Subjt:  NPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
A0A5D3C384 LINE-1 retrotransposable element ORF2 protein1.6e-0546.81Show/hide
Query:  PPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        P WKR I  KY+ +  GDIP  S + S++SPW S+++GLDWF++ ++
Subjt:  PPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
A0A5D3DS76 LINE-1 retrotransposable element ORF2 protein4.2e-0655.56Show/hide
Query:  WKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
        W+RLI AKY   FVGD PT   F STKSPW  I++G DWF  +++
Subjt:  WKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAATCCACGATTTCTGTGGTAGCAGAACATAGGAGATTGCAAACAGATGGGGAAAACCCTCCCTGGAAGAGACTGATCCTTGCCAAATACAAGCTCAAT
TTTGTGGGGGATATCCCAACAACAAGCAGGTTCTATAGCACAAAATCCCCCTGGATGTCCATAGTCAAAGGGCTCGACTGGTTCAAAACCAATCTATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAAATCCACGATTTCTGTGGTAGCAGAACATAGGAGATTGCAAACAGATGGGGAAAACCCTCCCTGGAAGAGACTGATCCTTGCCAAATACAAGCTCAAT
TTTGTGGGGGATATCCCAACAACAAGCAGGTTCTATAGCACAAAATCCCCCTGGATGTCCATAGTCAAAGGGCTCGACTGGTTCAAAACCAATCTATCCTAG
Protein sequenceShow/hide protein sequence
MNKSTISVVAEHRRLQTDGENPPWKRLILAKYKLNFVGDIPTTSRFYSTKSPWMSIVKGLDWFKTNLS