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ClCG01G012635 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G012635
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionChromo domain-containing protein
Genome locationCG_Chr01:25047680..25048277
RNA-Seq ExpressionClCG01G012635
SyntenyClCG01G012635
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV01859.1 hypothetical protein [Tanacetum cinerariifolium]1.5e-0650.82Show/hide
Query:  MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR
        + T YD+ +  I++   +  +GVPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I R
Subjt:  MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR

GEX59468.1 chromo domain-like [Tanacetum cinerariifolium]1.9e-0650.82Show/hide
Query:  MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR
        + T YD+ +  I ++  +  +GVPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I R
Subjt:  MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR

KAA0025963.1 uncharacterized protein E6C27_scaffold34G002780 [Cucumis melo var. makuwa]1.1e-0655.32Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ TK+D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

KAA0033203.1 polyprotein [Cucumis melo var. makuwa]1.5e-0655.32Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE+D
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

KAA0042139.1 uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa]3.3e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ4 Uncharacterized protein5.4e-0755.32Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ TK+D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

A0A5A7SS05 Polyprotein7.1e-0755.32Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE+D
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

A0A5D3BX70 Chromo domain-containing protein1.6e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

A0A5D3BZR4 Reverse transcriptase2.1e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

A0A5D3D359 Uncharacterized protein1.6e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAAGGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGG
CAAGGACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTA
GTATCATCGCAGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTG
GAGAAGGATGCGTCAACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGC
AAGGCTGCGTCCGACGAATCACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAAGGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGG
CAAGGACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTA
GTATCATCGCAGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTG
GAGAAGGATGCGTCAACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGC
AAGGCTGCGTCCGACGAATCACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA
Protein sequenceShow/hide protein sequence
MGMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSLTRSRNIGRGPATRASLVSSQPTRRPMHLPHPTGTHSLERPIKSCAHKGGRV
EKDASTLVNRTLDASLGNAASHASLSKAAFDALLSKAASDESLDKVASDASLNAPQGKCP