CuGenDBv2

Gene ID	ClCG01G012880
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	syndetin
Genome location	CG_Chr01:25903005..25911117
RNA-Seq Expression	ClCG01G012880
Synteny	ClCG01G012880
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005829 - cytosol (cellular component) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR019514 - Syndetin, C-terminal IPR040047 - Syndetin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7019304.1 Syndetin, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-54

96.55

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

XP_022970284.1 syndetin-like isoform X1 [Cucurbita maxima]

2.6e-54

96.55

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

XP_022970285.1 syndetin-like isoform X2 [Cucurbita maxima]

2.6e-54

96.55

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

XP_038895533.1 syndetin isoform X1 [Benincasa hispida]

2.6e-54

95.69

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISR+KRCSDEGRALMSLDLQVLINGLQH VSANV+PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

XP_038895534.1 syndetin isoform X2 [Benincasa hispida]

2.6e-54

95.69

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISR+KRCSDEGRALMSLDLQVLINGLQH VSANV+PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VHT6 Syndetin

4.8e-54

93.97

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VSANVKPKLQMV+TFIKAYYLPETEYVHWAR+HPEYSKSQ+IGLVN+VASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

A0A6J1HII5 syndetin-like isoform X1

1.6e-54

96.55

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

A0A6J1HP30 syndetin-like isoform X2

1.6e-54

96.55

Show/hide

Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VS NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

A0A6J1I2F9 syndetin-like isoform X2

1.3e-54

96.55

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

A0A6J1I532 syndetin-like isoform X1

1.3e-54

96.55

Show/hide

Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQD+LLEYGLDIVAE LIEGISRIKRCSDEGRALMSLDLQVLINGLQH VSANVKPKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASM
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLEILEKIE
Subjt:  KGWKRKTRLEILEKIE

SwissProt top hits

e value

%identity

Alignment

F1LSG8 Syndetin

1.2e-14

37.07

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        V ++L E+ + +    ++EG + +K+CS+EGRALM LD Q  +  L+ L      P  + VE +IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEILEKIE

Q5ZKV9 Syndetin

1.0e-13

34.69

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Query:  LPEEEEGERRRTAVLCSLLRRQEEEIQKVAHVQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYY
        L E EE  RR        L    + ++    V ++L E+ + +    L+EG + +K+CS+EGRALM LD Q  +  L+ L      P  + VET+IKAYY
Subjt:  LPEEEEGERRRTAVLCSLLRRQEEEIQKVAHVQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYY

Query:  LPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        L E +   W + H EYS   +  LVN V       +K R ++L  I+
Subjt:  LPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q8CI71 Syndetin

2.5e-15

37.93

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Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        V ++L E+ + +    ++EG + +K+CS+EGRALM LD Q  +  L+ L      P  + VET+IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEILEKIE

Q96JG6 Syndetin

2.5e-15

37.93

Show/hide

Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        V ++L E+ + +    ++EG + +K+CS+EGRALM LD Q  +  L+ L      P  + VET+IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEILEKIE

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

3.4e-52

81.9

Show/hide

Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQ++LLEYG++I AE+L+EG+SRIKRC+DEGR LMSLDLQVLINGLQH V   VKPKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLVNLVA+M
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLE++EKIE
Subjt:  KGWKRKTRLEILEKIE

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

3.4e-52

81.9

Show/hide

Query:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM
        VQ++LLEYG++I AE+L+EG+SRIKRC+DEGR LMSLDLQVLINGLQH V   VKPKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLVNLVA+M
Subjt:  VQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSANVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASM

Query:  KGWKRKTRLEILEKIE
        KGWKRKTRLE++EKIE
Subjt:  KGWKRKTRLEILEKIE

Sequences

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CDS sequence

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mRNA sequence

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ATGAATCGCCCTAGAGGGGAGGAGGAGGTAGGAACAGAGGTAGAGGAGGAAAGAGAGGAGAATAGAGAGGGACGGTGGGGATTACCTGAGGAGGAGGAAGGAGAGAGGAG
GAGAACGGCAGTGCTCTGTTCCCTTCTCAGGCGTCAAGAGGAAGAAATTCAAAAAGTTGCACATGTTCAAGACGTCCTCTTGGAGTATGGACTGGATATCGTTGCAGAAA
TTCTTATTGAAGGTATATCACGAATAAAGAGATGTTCAGATGAAGGACGCGCTCTCATGTCGTTAGATCTTCAGGTGTTAATCAATGGCTTGCAACATTTAGTTTCAGCG
AATGTGAAGCCTAAATTACAAATGGTTGAGACCTTCATTAAGGCGTACTACCTCCCAGAAACTGAATATGTACACTGGGCACGTGCTCACCCGGAATACAGCAAGAGCCA
AGTTATCGGTTTGGTTAACCTGGTGGCATCGATGAAAGGGTGGAAGAGGAAAACCCGGTTGGAAATATTGGAGAAGATTGAGTGAAACAATCATAATTTTGGATAATTAT
GTACGAACGAAGTTTTTGAATCACTTCACATTCTTTTTTTCTCCCATTGCTGTTCATTATAGGAAGAAATAATGTATTTTCAAAATATTATCGATCATCTTAGTTCTCCA
GTTTGTATAGTTATTAATATCTCGTTTGAAGATCATAATTCTGCAATCAAAGATTAAAAATGTAAATTCTGCAGACGAGTTGTTTATGGTAGTAAAACGAGCATA

Protein sequence

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MNRPRGEEEVGTEVEEEREENREGRWGLPEEEEGERRRTAVLCSLLRRQEEEIQKVAHVQDVLLEYGLDIVAEILIEGISRIKRCSDEGRALMSLDLQVLINGLQHLVSA
NVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

ClCG01G012880 (gene) of Watermelon (Charleston Gray) v2.5 genome