CuGenDBv2

Gene ID	ClCG01G012957
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Genome location	CG_Chr01:26051855..26052364
RNA-Seq Expression	ClCG01G012957
Synteny	ClCG01G012957
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

6.9e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

6.9e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

6.9e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

XP_038882325.1 uncharacterized protein LOC120073574 [Benincasa hispida]

4.3e-62

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD K RALEFQ+GDKVLIKLRP+QFRFRGQ+ QR+VRKYEGPV+VIEKVG+ SYRVQLPSWMKIHPVIHVS LKPYHPDP DE+RN++ RPPVTMK
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ
        +  EK + +IL  +TRR+GRPRR+L EFLVKW+DL +EEISWERA+D ++A   IA FEQ
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ

XP_038885809.1 uncharacterized protein LOC120076104 [Benincasa hispida]

3.9e-55

76.6

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRRALEFQ+GDKVLIKLRP++FRFRGQR QR+VRKYEGPV+VIEKVG+ SYRVQLPSWMKIHPVIHVS LKPYH DP DE+RN++ RPPVTMK
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEIS
        +  EK + +IL  + RR+GRPRR+L EFLVKW+DL +EEIS
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEIS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E2 Reverse transcriptase

3.3e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5A7UXR6 Reverse transcriptase

3.3e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3BYE6 Reverse transcriptase

3.3e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3C4R1 Reverse transcriptase

3.3e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3DBE0 Reverse transcriptase

3.3e-52

62.5

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Query:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCA
AAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATG
TGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATA
CTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGA
CCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

mRNA sequence

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Protein sequence

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MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEI
LANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTSTN

ClCG01G012957 (gene) of Watermelon (Charleston Gray) v2.5 genome