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ClCG01G013075 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G013075
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPhotosystem II protein D1
Genome locationCG_Chr01:26186696..26189838
RNA-Seq ExpressionClCG01G013075
SyntenyClCG01G013075
Gene Ontology termsGO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0010242 - oxygen evolving activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACF23897.1 photosystem II protein D1, partial [uncultured bacterium]6.8e-0473.53Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + + IL+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
ADG03116.1 photosystem II protein D1, partial [uncultured eukaryote]5.2e-0473.53Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
KAG5122340.1 hypothetical protein JHK84_040680 [Glycine max]4.0e-0470Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELL
        FGQEEET +IVAAHGYFGRLIFQYA+ S + I+ +SS  L
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELL
QGR10201.1 photosystem II D1 protein, partial [Hapalidiales sp. YA_Twist-2019]5.2e-0463.83Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG
        FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG
VDD65979.1 unnamed protein product [Brassica oleracea]1.0e-0472.97Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS
        FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS
TrEMBL top hitse value%identityAlignment
A0A287U321 Uncharacterized protein6.6e-0571.43Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL
        FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL
A0A287U3B3 Uncharacterized protein6.6e-0571.43Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL
        FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL
A0A3P6HJ61 Photosystem II protein D15.1e-0572.97Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS
        FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS
A0A650CAX4 Photosystem II protein D1 (Fragment)2.5e-0463.83Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG
        FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG
D6BK85 Photosystem II protein D1 (Fragment)2.5e-0473.53Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
SwissProt top hitse value%identityAlignment
A5A8K9 Photosystem II protein D1 22.0e-0673.53Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ S +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
B1XIP3 Photosystem II protein D1 33.4e-0670.59Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
P07826 Photosystem II protein D1 13.4e-0670.59Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
P48265 Photosystem II protein D13.4e-0670.59Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
Q8DIV4 Photosystem II protein D1 33.4e-0670.59Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A3.1e-0770.59Show/hide
Query:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGC
TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGC
TTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGC
TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGC
TTTAG
Protein sequenceShow/hide protein sequence
MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL