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ClCG01G013480 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G013480
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
Genome locationCG_Chr01:26669432..26670364
RNA-Seq ExpressionClCG01G013480
SyntenyClCG01G013480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_033739172.1 mucin-2-like [Pecten maximus]4.7e-0635.71Show/hide
Query:  SAAPLQIHSSPPRSRSFRHCVVQTRPPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPSHHVDQSPSQRRADP---RTP
        S  P + + SP   R+         P P   +P P PRR +PS      + PR        +P R + SP  RR +P P+   + SP+ RR +P    TP
Subjt:  SAAPLQIHSSPPRSRSFRHCVVQTRPPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPSHHVDQSPSQRRADP---RTP

Query:  HRADPSLAPRRADPR-TPHRIDPSPPPRQADPR-TSHSADLSLAPRRADPRTALRRSFPAAGSSRSTN
         R +PS  PRR +P  TP R +PSP PR+ +P  T    ++S  PRR +P   LRR+ P+  + R TN
Subjt:  HRADPSLAPRRADPR-TPHRIDPSPPPRQADPR-TSHSADLSLAPRRADPRTALRRSFPAAGSSRSTN
XP_041065244.1 peroxisome proliferator-activated receptor gamma coactivator-related protein 1 [Carcharodon carcharias]4.7e-0638.81Show/hide
Query:  PPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPS-HHVDQSPSQRRADPR-TPHRADPSLAPRRADPR-TPHRIDPSPP
        P P   +P P PR A+PS        P  R  +   +P  A+ SP PR A+P P+    + SP+ R A+P  TP  A+PS  PR A+P  TP   +PSP 
Subjt:  PPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPS-HHVDQSPSQRRADPR-TPHRADPSLAPRRADPR-TPHRIDPSPP

Query:  PRQADPR-TSHSADLSLAPRRADPRTALRRSFPA
        PR A+P  T  +A+ S  PR A+P    R + P+
Subjt:  PRQADPR-TSHSADLSLAPRRADPRTALRRSFPA
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATCAAGAAAATGTTTCTCATTAAAACCCTATTTACATTAGGGTTTGGAAACTCACATCTTCATAAGATCCGCCATCGCCTCTCCATATCCATTCCTTTG
AGTTCGCCGTGGCCGGAAGCATTAACCAGTTGTATCGTTGGTCGTTTGCCGTTGGTTCCTAAAGGATCATCAACCGCCGCCGCCACCGGTTCGTGGTCTCATCTG
TCCGCCGCGCCTCTGCAAATCCATTCGTCGCCTCCTCGATCTCGATCATTCCGCCACTGCGTCGTGCAGACCCGTCCGCCGCCGCATTGTGTAGATCCGTACCCG
GCGCCACGTCGTGCAGATCCGTCCCGCAACTGCATCGTGCAGATCCGTCCTCGCTACCGCGTCGAGCAGACCCATGAATCACCGCATCGCGCAGATTCGTCCCCG
GCACCACGTCGTGCAGATCCACGACCATCGCATCACGTAGATCAGTCCCCGTCGCAGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCGTCCCTGGCG
CCGCGTCGAGCAGATCCACGAACACCGCATCGCATAGATCCGTCCCCGCCGCCGCGTCAAGCAGATCCACGAACATCGCATAGCGCAGATCTGTCCCTGGCGCCG
CGTCGAGCAGATCCACGAACCGCATTGCGTAGATCCTTCCCCGCCGCTGGGTCGAGCAGATCCACGAACCGCCGCCGCATCGTGCAAGAACTTCTGCCGCCGCAT
CGTGCAGGTCTGTTCGCTGCCGCATCGTGCAAGTCAGTTCGCCGCTGCCTCGTGCAAATCCTTCCGCCACCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTC
GTGGTAGTTTTTGGGTTGACCGGTTCGTGGTTCGTTGTAGCAACTTTGCACCGCCGGTTCGTGGTAGTTTTTGGGTTTGCTAGTTCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCATCAAGAAAATGTTTCTCATTAAAACCCTATTTACATTAGGGTTTGGAAACTCACATCTTCATAAGATCCGCCATCGCCTCTCCATATCCATTCCTTTG
AGTTCGCCGTGGCCGGAAGCATTAACCAGTTGTATCGTTGGTCGTTTGCCGTTGGTTCCTAAAGGATCATCAACCGCCGCCGCCACCGGTTCGTGGTCTCATCTG
TCCGCCGCGCCTCTGCAAATCCATTCGTCGCCTCCTCGATCTCGATCATTCCGCCACTGCGTCGTGCAGACCCGTCCGCCGCCGCATTGTGTAGATCCGTACCCG
GCGCCACGTCGTGCAGATCCGTCCCGCAACTGCATCGTGCAGATCCGTCCTCGCTACCGCGTCGAGCAGACCCATGAATCACCGCATCGCGCAGATTCGTCCCCG
GCACCACGTCGTGCAGATCCACGACCATCGCATCACGTAGATCAGTCCCCGTCGCAGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCGTCCCTGGCG
CCGCGTCGAGCAGATCCACGAACACCGCATCGCATAGATCCGTCCCCGCCGCCGCGTCAAGCAGATCCACGAACATCGCATAGCGCAGATCTGTCCCTGGCGCCG
CGTCGAGCAGATCCACGAACCGCATTGCGTAGATCCTTCCCCGCCGCTGGGTCGAGCAGATCCACGAACCGCCGCCGCATCGTGCAAGAACTTCTGCCGCCGCAT
CGTGCAGGTCTGTTCGCTGCCGCATCGTGCAAGTCAGTTCGCCGCTGCCTCGTGCAAATCCTTCCGCCACCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTC
GTGGTAGTTTTTGGGTTGACCGGTTCGTGGTTCGTTGTAGCAACTTTGCACCGCCGGTTCGTGGTAGTTTTTGGGTTTGCTAGTTCTTGGTAG
Protein sequenceShow/hide protein sequence
MPIKKMFLIKTLFTLGFGNSHLHKIRHRLSISIPLSSPWPEALTSCIVGRLPLVPKGSSTAAATGSWSHLSAAPLQIHSSPPRSRSFRHCVVQTRPPPHCVDPYP
APRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPSHHVDQSPSQRRADPRTPHRADPSLAPRRADPRTPHRIDPSPPPRQADPRTSHSADLSLAP
RRADPRTALRRSFPAAGSSRSTNRRRIVQELLPPHRAGLFAAASCKSVRRCLVQILPPPPLHILSRRRRFVVVFGLTGSWFVVATLHRRFVVVFGFASSW