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ClCG01G013740 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G013740
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
Genome locationCG_Chr01:27444408..27447565
RNA-Seq ExpressionClCG01G013740
SyntenyClCG01G013740
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1818829.1 unnamed protein product [Ananas comosus var. bracteatus]4.0e-1565.22Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N RYY+LN ++D FY+YY+ T+ S KKI K LQ KYDTE+AG KKYAASCFF +QMV+ K VVEQ QD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

KAF5947981.1 hypothetical protein HYC85_013938 [Camellia sinensis]1.2e-1671.64Show/hide
Query:  RYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        R+Y+LN +AD FY+YYDTT+TS KKI K LQ KYDTEEAG KKYAA+ FF FQMVD K  VEQAQD+
Subjt:  RYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

XP_030945271.1 uncharacterized protein LOC115969796 [Quercus lobata]5.6e-1771.01Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R Y+LN +ADHFY+YYDTT+ S KKI K LQ+KYDTEEAG KKYAAS FF +QMVD K VV+QAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

XP_041021825.1 uncharacterized protein LOC121263098 [Juglans microcarpa x Juglans regia]1.2e-1466.67Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R Y+LN +AD FY++Y+TT++S KKI K LQNKYDTEEA  KKYAAS FF +QMVD K V EQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

XP_042954588.1 uncharacterized protein LOC122290999 [Carya illinoinensis]5.2e-1568.66Show/hide
Query:  RYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        R Y+LN +AD FY+YY+TT+TS KKI K LQ+KYDTEEA  KKYAAS FF +QM+DEK V EQAQD+
Subjt:  RYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

TrEMBL top hitse value%identityAlignment
A0A2N9ESI2 Uncharacterized protein8.4e-1973.91Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R+Y+LN +ADHFY+YYDTT+TS KKI K LQ+KYDTEEAG KKYAAS FF +QMVD K VVEQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

A0A2N9F4G4 Uncharacterized protein8.4e-1973.91Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R+Y+LN +ADHFY+YYDTT+TS KKI K LQ+KYDTEEAG KKYAAS FF +QMVD K VVEQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

A0A2N9FDE9 Uncharacterized protein8.4e-1973.91Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R+Y+LN +ADHFY+YYDTT+TS KKI K LQ+KYDTEEAG KKYAAS FF +QMVD K VVEQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

A0A2N9FP51 Uncharacterized protein8.4e-1971.01Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R+Y+LN +ADHFY+YYDTT+TS KKI K LQ+KYDTE+ G KKYA SCFF +QMVD K VVEQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

A0A2N9I4G7 Uncharacterized protein8.4e-1973.91Show/hide
Query:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY
        N R+Y+LN +ADHFY+YYDTT+TS KKI K LQ+KYDTEEAG KKYAAS FF +QMVD K VVEQAQD+
Subjt:  NNRYYILNYIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAACGCCCTACACAACCAAACCTTGGGAGGGTTGCCTGTTAAGGGAAAATTTTATGAGGAGGTCATCCTTAGTCTCGAAGAGTTGATTGGAGGAGTGGAGAGACA
GAACATATTTGGCGGCCTTTCTTTCCTATTGGCTTTGTGCCTTGTATTCCCTCAAGGGAACACTACCAATGTTCGACCCTGCGCTTTTAGAGTCGCCTATCTAATAGCAG
AAGGTGATAGCTTTAGCTTGGCGGTCTCTACCTTGACTAATATTTACCATGGATTGGTTAAAGTCTCAAAAGCAACACAAACAGTGGGACGTATGGATGCTTGTTTTCCA
ATGCACTATGTTTCCAGCTGGCTAGCTCGTTATATTTGGATCAAGGACCAACAGGTTTGGCACTTCAATAAAAATGCATTTTTGGAAAGAGGATCTAGTACGAGTCCTCT
ATTAGATTGGTGGCGTCACCTTTGGAAACTACATATTCCAGCCAAGGTGTTTGTAGAAGTAAGGAAGAATCTATGTGTGATGCTTTGTTTTGGTGTTTTAGAGCTAAATA
AATTTGGAACTCCCTTTCTTGGAGAAGTGCTTGATGATGGTAAATTGGCTCTATCCTGTATTACTACGTGGGCTATTTGGAATGATAGGAATAAGATCGCTCACTCGAGT
ATCCTTCCTTCTATTGAGTTCTGTTGTGAATGGATTTTGGATTATGCAAGTGGGGTGTGCTATAAGACGTTTGAGGCTAATAAAGTTATTCATGGGTTGATTAATAAGGT
TGATGCTCTCTTCGGTGAGGTTTCTATTATCCATGTTGATGCTGCTTGCTCGTCTAATTTGGTGAGTTATGGGGTTGGGGGGATTGTTGGTTCTTCCTTTGGTCGCATTC
TTGCCTCTTTAAGTGGGTTTTATGATGCCTTTTTAAGCATTTTGGGAGTTGAGGCCTCGACTACTTTTGAAGGTCTTCGGTTGGTGAACAGGATGGGTATTACTCAGATT
CTGGTTTTATCTGATTCGTTCACTATTATTCAAATTCTTAAGGGATTTCGAGCCCCTTTTGAAAGTGGTAAATTAGGTGGTAGCCTTAAAAGTCTTTTACCTTTGTTTCG
TTTGGAGTCTTTTCAGTATATTCCGAGAGATCATAATTTATCTGCTCATTCATTGGTGTGTGATAGCATTAGTGGTTTGAGTTTGCTTCAACTAAACGACTTTCCATCTG
TTTCAGAATCTCTTTATTCTTCTCATTTTGCTTTTCTATTGGATAGTGTGGACGTCGGCCGCTCCGCATCATTTGGGGCATGTGTCAACAATCGGTATTATATATTAAAT
TATATTGCTGATCATTTTTATAACTATTATGATACTACTTTCACGTCTACCAAGAAAATACAAAAAACCTTGCAGAATAAATACGATACTGAAGAAGCAGGTGGGAAAAA
GTATGCTGCAAGTTGCTTCTTTTGCTTTCAAATGGTGGATGAAAAATTTGTGGTAGAGCAAGCACAAGACTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAACGCCCTACACAACCAAACCTTGGGAGGGTTGCCTGTTAAGGGAAAATTTTATGAGGAGGTCATCCTTAGTCTCGAAGAGTTGATTGGAGGAGTGGAGAGACA
GAACATATTTGGCGGCCTTTCTTTCCTATTGGCTTTGTGCCTTGTATTCCCTCAAGGGAACACTACCAATGTTCGACCCTGCGCTTTTAGAGTCGCCTATCTAATAGCAG
AAGGTGATAGCTTTAGCTTGGCGGTCTCTACCTTGACTAATATTTACCATGGATTGGTTAAAGTCTCAAAAGCAACACAAACAGTGGGACGTATGGATGCTTGTTTTCCA
ATGCACTATGTTTCCAGCTGGCTAGCTCGTTATATTTGGATCAAGGACCAACAGGTTTGGCACTTCAATAAAAATGCATTTTTGGAAAGAGGATCTAGTACGAGTCCTCT
ATTAGATTGGTGGCGTCACCTTTGGAAACTACATATTCCAGCCAAGGTGTTTGTAGAAGTAAGGAAGAATCTATGTGTGATGCTTTGTTTTGGTGTTTTAGAGCTAAATA
AATTTGGAACTCCCTTTCTTGGAGAAGTGCTTGATGATGGTAAATTGGCTCTATCCTGTATTACTACGTGGGCTATTTGGAATGATAGGAATAAGATCGCTCACTCGAGT
ATCCTTCCTTCTATTGAGTTCTGTTGTGAATGGATTTTGGATTATGCAAGTGGGGTGTGCTATAAGACGTTTGAGGCTAATAAAGTTATTCATGGGTTGATTAATAAGGT
TGATGCTCTCTTCGGTGAGGTTTCTATTATCCATGTTGATGCTGCTTGCTCGTCTAATTTGGTGAGTTATGGGGTTGGGGGGATTGTTGGTTCTTCCTTTGGTCGCATTC
TTGCCTCTTTAAGTGGGTTTTATGATGCCTTTTTAAGCATTTTGGGAGTTGAGGCCTCGACTACTTTTGAAGGTCTTCGGTTGGTGAACAGGATGGGTATTACTCAGATT
CTGGTTTTATCTGATTCGTTCACTATTATTCAAATTCTTAAGGGATTTCGAGCCCCTTTTGAAAGTGGTAAATTAGGTGGTAGCCTTAAAAGTCTTTTACCTTTGTTTCG
TTTGGAGTCTTTTCAGTATATTCCGAGAGATCATAATTTATCTGCTCATTCATTGGTGTGTGATAGCATTAGTGGTTTGAGTTTGCTTCAACTAAACGACTTTCCATCTG
TTTCAGAATCTCTTTATTCTTCTCATTTTGCTTTTCTATTGGATAGTGTGGACGTCGGCCGCTCCGCATCATTTGGGGCATGTGTCAACAATCGGTATTATATATTAAAT
TATATTGCTGATCATTTTTATAACTATTATGATACTACTTTCACGTCTACCAAGAAAATACAAAAAACCTTGCAGAATAAATACGATACTGAAGAAGCAGGTGGGAAAAA
GTATGCTGCAAGTTGCTTCTTTTGCTTTCAAATGGTGGATGAAAAATTTGTGGTAGAGCAAGCACAAGACTATTAG
Protein sequenceShow/hide protein sequence
MTNALHNQTLGGLPVKGKFYEEVILSLEELIGGVERQNIFGGLSFLLALCLVFPQGNTTNVRPCAFRVAYLIAEGDSFSLAVSTLTNIYHGLVKVSKATQTVGRMDACFP
MHYVSSWLARYIWIKDQQVWHFNKNAFLERGSSTSPLLDWWRHLWKLHIPAKVFVEVRKNLCVMLCFGVLELNKFGTPFLGEVLDDGKLALSCITTWAIWNDRNKIAHSS
ILPSIEFCCEWILDYASGVCYKTFEANKVIHGLINKVDALFGEVSIIHVDAACSSNLVSYGVGGIVGSSFGRILASLSGFYDAFLSILGVEASTTFEGLRLVNRMGITQI
LVLSDSFTIIQILKGFRAPFESGKLGGSLKSLLPLFRLESFQYIPRDHNLSAHSLVCDSISGLSLLQLNDFPSVSESLYSSHFAFLLDSVDVGRSASFGACVNNRYYILN
YIADHFYNYYDTTFTSTKKIQKTLQNKYDTEEAGGKKYAASCFFCFQMVDEKFVVEQAQDY