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ClCG01G015530 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G015530
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description50S ribosomal protein L17
Genome locationCG_Chr01:29755909..29759765
RNA-Seq ExpressionClCG01G015530
SyntenyClCG01G015530
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148646.1 uncharacterized protein LOC101221792 [Cucumis sativus]2.8e-6587.42Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKE            VR DAVLHKLFTE+AYRYKDR GGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPPPPQR PLDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

XP_008441029.1 PREDICTED: 50S ribosomal protein L17 [Cucumis melo]8.2e-6586.16Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKE            VR DA+LHKLFTE+AYRYKDRAGGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEF+DRENELRQSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

XP_022132421.1 uncharacterized protein LOC111005280 [Momordica charantia]1.2e-6385.53Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR T HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE            VR D VLHKLFTE+AYRYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNP P Q+APLDPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

XP_022979157.1 uncharacterized protein LOC111478877 [Cucurbita maxima]1.3e-7083.71Show/hide
Query:  KPRGFSSSSSVFAHYSPLTMTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMA
        K  GFSSS+SVFA + PLTMTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE            VR D VLHKLFTE+A
Subjt:  KPRGFSSSSSVFAHYSPLTMTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMA

Query:  YRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        YRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELRQSKPPNP PPQ+AP+DPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  YRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

XP_038880926.1 50S ribosomal protein L17 [Benincasa hispida]8.5e-7091.82Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE            VR DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

TrEMBL top hitse value%identityAlignment
A0A0A0KFP7 Uncharacterized protein1.4e-6587.42Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKE            VR DAVLHKLFTE+AYRYKDR GGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPPPPQR PLDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

A0A1S3B2I7 50S ribosomal protein L174.0e-6586.16Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKE            VR DA+LHKLFTE+AYRYKDRAGGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEF+DRENELRQSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

A0A5D3DPW3 50S ribosomal protein L174.0e-6586.16Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKE            VR DA+LHKLFTE+AYRYKDRAGGYTRFLRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEF+DRENELRQSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1BS83 uncharacterized protein LOC1110052805.7e-6485.53Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR T HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE            VR D VLHKLFTE+AYRYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNP P Q+APLDPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1IN09 uncharacterized protein LOC1114788776.3e-7183.71Show/hide
Query:  KPRGFSSSSSVFAHYSPLTMTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMA
        K  GFSSS+SVFA + PLTMTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE            VR D VLHKLFTE+A
Subjt:  KPRGFSSSSSVFAHYSPLTMTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMA

Query:  YRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
        YRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELRQSKPPNP PPQ+AP+DPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  YRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

SwissProt top hitse value%identityAlignment
A0KRQ0 50S ribosomal protein L171.1e-1948.65Show/hide
Query:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA
        R+L R++ HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++   K              RDA V+ KLFTE+  RY++R GGYTR L+  +R GD 
Subjt:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA

Query:  APMAYIEFIDR
        APMAYIE + R
Subjt:  APMAYIEFIDR

A0L5Z9 50S ribosomal protein L173.4e-2148.67Show/hide
Query:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE-----VRDA---------VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGD
        R+L R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++  GK       R A         V+HKLFT++A R KDR GGYTR L+TR R GD
Subjt:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE-----VRDA---------VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGD

Query:  AAPMAYIEFIDRE
         APM++IE ++R+
Subjt:  AAPMAYIEFIDRE

A4YBV7 50S ribosomal protein L171.1e-1948.65Show/hide
Query:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA
        R+L R++ HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++   K              RDA V+ KLFTE+  RY++R GGYTR L+  +R GD 
Subjt:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA

Query:  APMAYIEFIDR
        APMAYIE + R
Subjt:  APMAYIEFIDR

Q0HNR1 50S ribosomal protein L171.1e-1948.65Show/hide
Query:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA
        R+L R++ HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++   K              RDA V+ KLFTE+  RY++R GGYTR L+  +R GD 
Subjt:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA

Query:  APMAYIEFIDR
        APMAYIE + R
Subjt:  APMAYIEFIDR

Q8EK46 50S ribosomal protein L171.1e-1948.65Show/hide
Query:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA
        R+L R++ HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++   K              RDA V+ KLFTE+  RY++R GGYTR L+  +R GD 
Subjt:  RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGK------------EVRDA-VLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDA

Query:  APMAYIEFIDR
        APMAYIE + R
Subjt:  APMAYIEFIDR

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein6.3e-1540.74Show/hide
Query:  KLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE-------------VRDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAA
        KL R    R ++LR + +QL+KH RI+TT A+A  +R+  D M+   K+                 ++H LF E+  RY +R GGYTR +RT  R GD A
Subjt:  KLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE-------------VRDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAA

Query:  PMAYIEFI
        PMAYIE +
Subjt:  PMAYIEFI

AT5G09770.1 Ribosomal protein L17 family protein5.0e-6078.12Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+Q GKE            VR D VLHK+FTE+A+RYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  P PPQR PLDPW RSRL++QFAPPKE K  DSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI

AT5G64650.1 Ribosomal protein L17 family protein7.2e-5976.25Show/hide
Query:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR
        MTKFRKLGR   HRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+Q GKE            VR D VLHK+FTE+A+RYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKE------------VR-DAVLHKLFTEMAYRYKDRAGGYTRFLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  P PP R PLDPW RSRL++Q+APPKE K SDS++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAATACGTGGGCATTTCTGGTTGGGCCAAGGTTAAGCCCAGACGCTGTACTTTCGGCTTCGTCTCGTTCCTTGAATCAAAAACCCCGAACGAAACCTAGGGGTTTTTC
ATCTTCGAGCTCAGTCTTTGCTCACTATTCGCCATTAACGATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGAACAATGGTTTCTC
AGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGTCCGCGATGCTGTCCTT
CACAAACTATTCACAGAAATGGCTTATCGATACAAGGATAGAGCTGGCGGCTATACAAGATTTCTGCGGACTCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATAT
AGAATTTATTGATAGAGAAAATGAACTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGGCTCCGTTGGATCCGTGGACAAGATCACGGCTTAGCAAGCAGT
TCGCACCACCTAAAGAGATCAAATCCGACTCGGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
TTGAATACGTGGGCATTTCTGGTTGGGCCAAGGTTAAGCCCAGACGCTGTACTTTCGGCTTCGTCTCGTTCCTTGAATCAAAAACCCCGAACGAAACCTAGGGGTTTTTC
ATCTTCGAGCTCAGTCTTTGCTCACTATTCGCCATTAACGATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGAACAATGGTTTCTC
AGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGTCCGCGATGCTGTCCTT
CACAAACTATTCACAGAAATGGCTTATCGATACAAGGATAGAGCTGGCGGCTATACAAGATTTCTGCGGACTCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATAT
AGAATTTATTGATAGAGAAAATGAACTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGGCTCCGTTGGATCCGTGGACAAGATCACGGCTTAGCAAGCAGT
TCGCACCACCTAAAGAGATCAAATCCGACTCGGAAATCTGATACTTCATGTCCAATAAGAAGGCTTTTTTTTCCCCAAGAAGAACATCTAGCTACCCCCATCCAATTTGT
TTTGCAAACTTCAGATGTAAACCAAACGAGTATAGACACTGCTTTACATGCATGCTTAAGCTTTCCTTCAAACAAAAAGAGTATTTTTGAGCTCTCAAAGTTCCCCATTT
CTTGATAATTCCATATATTGTTTCATCTTTACAACATGACATCGGACCTTAAACTGATAATGGCCGAGTCTCTCTCAAGTCTCATCTCAACCTAATAAAAAAATATATGC
TTTAGGTGATTTTGGTTGAATATAGGTGAGGACCAAGGGTGATGGTGGATTGTGCATCTGTTGGAGTTGCAAATTTGGTTCTTGTCGTTTTGTTGACAGCCAGCAATTGC
TTTTCAGCAGCTCCAAAACTTGGAGAAGATGGCTTCAAATATTGTGAACGAGGTATGAACACCCAAAAAAAAATACCTAGGTTTATGTTAGTGCACTCATATTTGTACAT
CC
Protein sequenceShow/hide protein sequence
LNTWAFLVGPRLSPDAVLSASSRSLNQKPRTKPRGFSSSSSVFAHYSPLTMTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEVRDAVL
HKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI