; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG01G024990 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG01G024990
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionF-box domain-containing protein
Genome locationCG_Chr01:38032694..38036594
RNA-Seq ExpressionClCG01G024990
SyntenyClCG01G024990
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015878944.1 F-box protein SKIP19 [Ziziphus jujuba]8.0e-2360.61Show/hide
Query:  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI
        + E+  NWLELP  V   IL RLGAIEIL SAQ+VCSSWR         R IDMRN G+ Y +  DLE  C +A+DLSCGQL+DINIEFFGTD+LL+Y+
Subjt:  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI

XP_017232301.1 PREDICTED: F-box protein SKIP19-like [Daucus carota subsp. sativus]5.2e-2249.57Show/hide
Query:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE
        R R P   + + +  K  NWL+LPA +   IL RLGAIEIL SAQ VC++WRR+         IDM N G++ A+  DLE  C +A+D S GQL+DINIE
Subjt:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE

Query:  FFGTDKLLQYIARSG
        +FGTD+L++Y+A  G
Subjt:  FFGTDKLLQYIARSG

XP_023892935.1 putative F-box/LRR-repeat protein 23 isoform X1 [Quercus suber]2.3e-2251.26Show/hide
Query:  RARSP-KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINI
        + +SP  +S + S SEK  NWL+LP  V   ILQRLG IEIL +AQ VC+ WR +         IDMRNLG+++ +  DLE  C +A+D SCG L DINI
Subjt:  RARSP-KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINI

Query:  EFFGTDKLLQYIARSGEEV
        E+FGTDKLL YI +S  ++
Subjt:  EFFGTDKLLQYIARSGEEV

XP_030968251.1 putative F-box/LRR-repeat protein 23 [Quercus lobata]3.0e-2252.54Show/hide
Query:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE
        + +SP +S A S SE+  NWLELP  V   ILQRLG IEIL +AQ VC  WR +         IDMRNLG+++ +  DLE  C +A+D SCG L DINIE
Subjt:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE

Query:  FFGTDKLLQYIARSGEEV
        +FGTDKLL YI +S  ++
Subjt:  FFGTDKLLQYIARSGEEV

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]6.5e-2555.75Show/hide
Query:  KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTD
        +++  +    +  NWL+LPA VM MIL +LGAIEIL SAQ+VCSSWR         R+IDMRN G +Y +  DLE  C +AVD SCGQLIDINIE+FGTD
Subjt:  KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTD

Query:  KLLQYIARSGEEV
        +LLQYI +S  ++
Subjt:  KLLQYIARSGEEV

TrEMBL top hitse value%identityAlignment
A0A6A3AZC5 Putative F-box/LRR-repeat protein 233.6e-2154.9Show/hide
Query:  LSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQY
        +S + +  NWLELP  V   IL RLGAIEIL+SAQ+VCS WR++         IDMRNLG+++ +  DLE  C +AV+ SCG L+DINIE+FGTD+LL Y
Subjt:  LSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQY

Query:  IA
        I+
Subjt:  IA

A0A6J1AFD6 LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein 231.0e-2054.46Show/hide
Query:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE
        R ++  T+EA +R     NWLELP  V   IL RLGAIEIL  AQ+VCS WR++         IDM NLG++  + C LE  CA+AVD SCG L+DINIE
Subjt:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE

Query:  FFGTDKLLQYIA
         FGTDKLL +IA
Subjt:  FFGTDKLLQYIA

A0A6P3ZH66 F-box protein SKIP193.8e-2360.61Show/hide
Query:  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI
        + E+  NWLELP  V   IL RLGAIEIL SAQ+VCSSWR         R IDMRN G+ Y +  DLE  C +A+DLSCGQL+DINIEFFGTD+LL+Y+
Subjt:  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI

A0A7N2LPI5 F-box domain-containing protein1.5e-2252.54Show/hide
Query:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE
        + +SP +S A S SE+  NWLELP  V   ILQRLG IEIL +AQ VC  WR +         IDMRNLG+++ +  DLE  C +A+D SCG L DINIE
Subjt:  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE

Query:  FFGTDKLLQYIARSGEEV
        +FGTDKLL YI +S  ++
Subjt:  FFGTDKLLQYIARSGEEV

A0A7N2LRH5 F-box domain-containing protein1.6e-2151.26Show/hide
Query:  RSPKTSEALSRSEKGP---NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINI
        R+P T+ A  R+ K     NWL+LP  V   ILQRLGAI+IL SAQ VC  WR         R IDM+NLG+++ +  DLE  C +A+D SCGQL DINI
Subjt:  RSPKTSEALSRSEKGP---NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINI

Query:  EFFGTDKLLQYIARSGEEV
        E+FGTD+LL YI +S  ++
Subjt:  EFFGTDKLLQYIARSGEEV

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 223.1e-1446Show/hide
Query:  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA
        EK  NW ELP  ++  IL RL  +EIL +A+ VC SWRR+         IDMRNL  +Y +Y  +EA C + VDLS G L++ NI+   F T  LL Y+A
Subjt:  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA

Q9M0U7 Putative F-box protein At4g054751.2e-1035.78Show/hide
Query:  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFF
        ++ R+  T       E+  NW++LP  +   IL RL   +IL +A+ +C +WRR+          NL +      D E+ C + VDLS G L++INIE F
Subjt:  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFF

Query:  GTDKLLQYI
         +D LL YI
Subjt:  GTDKLLQYI

Q9M0U9 F-box protein SKIP194.0e-1747.75Show/hide
Query:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV
        NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         IDM NLG++  +  +LE  C +AVD S G L+DI I +FGT  LL YIA      
Subjt:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV

Query:  ILSTPHHSNNL
             H S+NL
Subjt:  ILSTPHHSNNL

Q9S9V8 Putative F-box/LRR-repeat protein 97.7e-1346.39Show/hide
Query:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA
        NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         ID+R   NL     L+  +E  C  AVDLS G L++INI++      L YIA
Subjt:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA

Q9S9V9 Putative F-box/LRR-repeat protein 234.4e-1641.88Show/hide
Query:  KLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLI
        K+++S + S     +L + +K  NW ELP+ +   IL RLGAIEIL +AQ VC  W R+         ID+ N  +  A   DLE+ C +AVD S G LI
Subjt:  KLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLI

Query:  DINIEFFGTDKLLQYIA
        +I I ++GT+ L+ YIA
Subjt:  DINIEFFGTDKLLQYIA

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein2.8e-1847.75Show/hide
Query:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV
        NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         IDM NLG++  +  +LE  C +AVD S G L+DI I +FGT  LL YIA      
Subjt:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV

Query:  ILSTPHHSNNL
             H S+NL
Subjt:  ILSTPHHSNNL

AT4G05470.1 RNI-like superfamily protein1.7e-1034.09Show/hide
Query:  VTKQLLILLNFWVEVMDGKLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLE
        +T    +L  F  E  +G+  N +  +  T E+L   E+  NW++LP  +   IL RL   +IL +AQ VC  WRR+          N  +      D  
Subjt:  VTKQLLILLNFWVEVMDGKLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLE

Query:  ATCAYAVDLSCGQLIDINI-EFFGTDKLLQYI
        + C + VDLS G L++IN+ E F +D LL YI
Subjt:  ATCAYAVDLSCGQLIDINI-EFFGTDKLLQYI

AT4G05475.1 RNI-like superfamily protein8.8e-1235.78Show/hide
Query:  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFF
        ++ R+  T       E+  NW++LP  +   IL RL   +IL +A+ +C +WRR+          NL +      D E+ C + VDLS G L++INIE F
Subjt:  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFF

Query:  GTDKLLQYI
         +D LL YI
Subjt:  GTDKLLQYI

AT4G05490.1 RNI-like superfamily protein2.2e-1546Show/hide
Query:  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA
        EK  NW ELP  ++  IL RL  +EIL +A+ VC SWRR+         IDMRNL  +Y +Y  +EA C + VDLS G L++ NI+   F T  LL Y+A
Subjt:  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA

AT4G05497.1 RNI-like superfamily protein5.5e-1446.39Show/hide
Query:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA
        NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         ID+R   NL     L+  +E  C  AVDLS G L++INI++      L YIA
Subjt:  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACTCTAACTAATGTTTTGTTTTCTGAGTATCTTCTATTTGTCATTTTGACATCATGTAAAGCAACTCTAGGTTGTATTGAATTTTTGGGTATTGAAGTAATGGA
TGTAACTAAGCAACTCCTGATTTTATTGAATTTTTGGGTAGAAGTAATGGATGGTAAACTAAGCAACTCTAGGGCTAGGAGTCCGAAAACGAGCGAAGCCTTGAGTCGAT
CGGAAAAAGGGCCGAACTGGCTTGAACTGCCTGCAGTCGTAATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCG
TGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGA
CATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGCGGTGAAGAGGTGATTCTATCGACTCCACATCACAGTAACAACCTTTGGAAGATGA
TCACCCCCGAGATTGCTCACCAGCCACTTCAAGGCCACTCATCGCTGCAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATAACTCTAACTAATGTTTTGTTTTCTGAGTATCTTCTATTTGTCATTTTGACATCATGTAAAGCAACTCTAGGTTGTATTGAATTTTTGGGTATTGAAGTAATGGA
TGTAACTAAGCAACTCCTGATTTTATTGAATTTTTGGGTAGAAGTAATGGATGGTAAACTAAGCAACTCTAGGGCTAGGAGTCCGAAAACGAGCGAAGCCTTGAGTCGAT
CGGAAAAAGGGCCGAACTGGCTTGAACTGCCTGCAGTCGTAATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCG
TGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGA
CATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGCGGTGAAGAGGTGATTCTATCGACTCCACATCACAGTAACAACCTTTGGAAGATGA
TCACCCCCGAGATTGCTCACCAGCCACTTCAAGGCCACTCATCGCTGCAATCATAA
Protein sequenceShow/hide protein sequence
MITLTNVLFSEYLLFVILTSCKATLGCIEFLGIEVMDVTKQLLILLNFWVEVMDGKLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSS
WRRLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEVILSTPHHSNNLWKMITPEIAHQPLQGHSSLQS