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ClCG02G000480 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G000480
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPectin lyase-like superfamily protein
Genome locationCG_Chr02:518197..520123
RNA-Seq ExpressionClCG02G000480
SyntenyClCG02G000480
Gene Ontology termsGO:0016829 - lyase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI36250.3 unnamed protein product, partial [Vitis vinifera]1.3e-0470.27Show/hide
Query:  IVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELGRA
        +V F+I PDISLPIPTPE VGV+PE+  +M+FELGRA
Subjt:  IVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELGRA
GFY87511.1 pectin lyase-like superfamily protein [Actinidia rufa]7.4e-0572.97Show/hide
Query:  FDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLV
        F+IPPD+SLPIP PE VGVVP T LM+M ELGRA L+
Subjt:  FDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLV
TrEMBL top hitse value%identityAlignment
A0A0A9QNA9 Uncharacterized protein5.3e-0962.71Show/hide
Query:  MWPPLPWSDLIRIPAAESQTFKSSIVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELG
        M+PP P S L  I  AE  T++S    FD+PPDISLP PTPE VGVVPET  M MFELG
Subjt:  MWPPLPWSDLIRIPAAESQTFKSSIVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELG
A0A7J0EM14 Pectin lyase-like superfamily protein3.6e-0572.97Show/hide
Query:  FDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLV
        F+IPPD+SLPIP PE VGVVP T LM+M ELGRA L+
Subjt:  FDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCTCCTCTACCTTGGTCGGATTTGATCCGAATCCCAGCTGCCGAATCCCAAACGTTTAAATCCTCGATCGTAATGTTTGATATTCCACCCGACATCTCA
CTTCCTATTCCAACACCAGAACAGGTTGGAGTGGTGCCAGAAACTCGCCTTATGATGATGTTCGAGCTCGGGCGTGCAAGCTTAGTCATGATCAGAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCTCCTCTACCTTGGTCGGATTTGATCCGAATCCCAGCTGCCGAATCCCAAACGTTTAAATCCTCGATCGTAATGTTTGATATTCCACCCGACATCTCA
CTTCCTATTCCAACACCAGAACAGGTTGGAGTGGTGCCAGAAACTCGCCTTATGATGATGTTCGAGCTCGGGCGTGCAAGCTTAGTCATGATCAGAGTTTGA
Protein sequenceShow/hide protein sequence
MWPPLPWSDLIRIPAAESQTFKSSIVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLVMIRV