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ClCG02G002330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G002330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionhomeobox-DDT domain protein RLT2-like isoform X2
Genome locationCG_Chr02:2397536..2402860
RNA-Seq ExpressionClCG02G002330
SyntenyClCG02G002330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572264.1 Homeobox-DDT domain protein RLT2, partial [Cucurbita argyrosperma subsp. sororia]2.8e-0765.45Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
XP_022952970.1 homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata]2.8e-0765.45Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
XP_022952971.1 homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata]2.8e-0765.45Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
XP_022968923.1 LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima]2.1e-0744.12Show/hide
Query:  GAFRGCKWFEEANS---------GRGARIYKIVKGFSHKEYQ-----RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRML
        G  RG K  +  NS         G   +I + V  +   + +     R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML
Subjt:  GAFRGCKWFEEANS---------GRGARIYKIVKGFSHKEYQ-----RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRML

Query:  PK
         +
Subjt:  PK
XP_023554340.1 homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-0663.64Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +N RML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
TrEMBL top hitse value%identityAlignment
A0A6J1GLQ4 homeobox-DDT domain protein RLT2-like isoform X21.4e-0765.45Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
A0A6J1GND4 homeobox-DDT domain protein RLT2-like isoform X11.4e-0765.45Show/hide
Query:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
        R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML +
Subjt:  RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRMLPK
A0A6J1HZH7 LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like1.0e-0744.12Show/hide
Query:  GAFRGCKWFEEANS---------GRGARIYKIVKGFSHKEYQ-----RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRML
        G  RG K  +  NS         G   +I + V  +   + +     R G+RSARS+Q S RKIKF SEG H EETINE S+L+ DNS E  D +NIRML
Subjt:  GAFRGCKWFEEANS---------GRGARIYKIVKGFSHKEYQ-----RHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNIRML

Query:  PK
         +
Subjt:  PK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAAGCAAAGGCCTCAATATAGTATTAGTTGCAAATAAAATTCAGATTCCATGTTCTACAGGAGCGTTTAGAGGCTGCAAATGGTTTGAAGAAGCAAAT
TCTGGCAGAGGCGCAAGAATTTACAAAATCGTTAAGGGATTTTCTCACAAGGAGTATCAGAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGG
AAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAGCTCAGGACAACAGTCAAGAATGTGGTGATTACCGGAACATT
AGGATGTTGCCAAAAAGGACAATACTTTTAAACTCTACAAAAGTTGAAGTCGAGTTATTAGAAAGTATCCGATGGCAAGTTCGAGCAAGCAAGTGCATGCAATTC
AAATCTGTAGAAGTACAGCAAAGAAAGTTCCTTTGTACAAATCTTCAAGGCTACAAGGCAATCTATTCTCAATTGGAGGAGCTTTACGAGAAGCAGCTTGGTGCA
TTTCGCGGATTGAATCTAAATGTTGATGACCGGTCGCCGGTGGAAAAGAAGGAAGCTCCACCAGGACCACCAGCATCAGGCGGCGGCACCTGA
mRNA sequenceShow/hide mRNA sequence
TCTTCTTTGTTTCAAACAACAATTTACGGTTTGATTTTGAGTTTTGTTTCCTTCTTTTTCTCATTTTTAGTTTGTTTTCACTCATACCCACATCTCAATTCCACT
CACTCCTCTTGTTTCGAGTTTAGGAACGGCATCTTTATTCCAAAATTAACCTTCCATCAAAACCTAATTTCATTGTTCTTCAATGGGAGGGAATGGTTAAGACAT
TTAGGTCTCTTCTTCTTCTACCCTCTTATTATTTTTCTCTTACTTGTCGTGATTCTCTCCGTTTTCCCCCCCTTTTTTGGGTATTGAATGGATTCAATGGGTGAG
AGATTGAGGACTGTGTGGTGGTACTAGTAACTTGGATTTAGCAGAAGAATTGGAGCTTTGTGTTGTCGACAATGGATGGAAGCAAAGGCCTCAATATAGTATTAG
TTGCAAATAAAATTCAGATTCCATGTTCTACAGGAGCGTTTAGAGGCTGCAAATGGTTTGAAGAAGCAAATTCTGGCAGAGGCGCAAGAATTTACAAAATCGTTA
AGGGATTTTCTCACAAGGAGTATCAGAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTG
AAGAAACTATCAATGAGATGTCAGAATTAGCTCAGGACAACAGTCAAGAATGTGGTGATTACCGGAACATTAGGATGTTGCCAAAAAGGACAATACTTTTAAACT
CTACAAAAGTTGAAGTCGAGTTATTAGAAAGTATCCGATGGCAAGTTCGAGCAAGCAAGTGCATGCAATTCAAATCTGTAGAAGTACAGCAAAGAAAGTTCCTTT
GTACAAATCTTCAAGGCTACAAGGCAATCTATTCTCAATTGGAGGAGCTTTACGAGAAGCAGCTTGGTGCATTTCGCGGATTGAATCTAAATGTTGATGACCGGT
CGCCGGTGGAAAAGAAGGAAGCTCCACCAGGACCACCAGCATCAGGCGGCGGCACCTGA
Protein sequenceShow/hide protein sequence
MDGSKGLNIVLVANKIQIPCSTGAFRGCKWFEEANSGRGARIYKIVKGFSHKEYQRHGQRSARSKQTSARKIKFSSEGSHLEETINEMSELAQDNSQECGDYRNI
RMLPKRTILLNSTKVEVELLESIRWQVRASKCMQFKSVEVQQRKFLCTNLQGYKAIYSQLEELYEKQLGAFRGLNLNVDDRSPVEKKEAPPGPPASGGGT