CuGenDBv2

Gene ID	ClCG02G002810
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box protein SNE-like
Genome location	CG_Chr02:2791930..2792409
RNA-Seq Expression	ClCG02G002810
Synteny	ClCG02G002810
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-64

83.33

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKP
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-66

83.02

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

6.9e-54

71.25

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Query:  MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL
        MQRNA +++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA  DDSLWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L
Subjt:  MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL

Query:  TRLS--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
           +  RS  + RV TLQD +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Subjt:  TRLS--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

4.2e-67

83.65

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

2.7e-66

83.02

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

TrEMBL top hits

e value

%identity

Alignment

A0A2P6S1H4 Putative F-box domain-containing protein

2.6e-46

66.45

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Query:  QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLSRS
        Q+++ + N +  +F INDH+DI+ E+LKRLD PSL  AACVCRLWC++A  +DSLWEHLCFRH+SS PPSS+RP+VLALGGYKRLY++C+RPVL+RLS S
Subjt:  QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLSRS

Query:  GLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
         L+ RVWT +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLC P+NV
Subjt:  GLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A5N6RCK8 F-box domain-containing protein

6.7e-47

69.93

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Query:  QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLSRS
        Q+   +   KK KF INDH DILTEILKRLD PSL  AACVCRLWCA+A  +DSLWEHLCFRH++S PPSS+RP+VLALGGYKRLY++C+RPVLTRL  S
Subjt:  QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLSRS

Query:  GLL-PRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
         L+  RVWT +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLCKP+NV
Subjt:  GLL-PRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1C339 F-box protein SNE-like

3.3e-54

71.25

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Query:  MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL
        MQRNA +++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA  DDSLWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L
Subjt:  MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVL

Query:  TRLS--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
           +  RS  + RV TLQD +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Subjt:  TRLS--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1GK18 F-box protein SNE-like

2.0e-67

83.65

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

A0A6J1HXD0 F-box protein SNE-like

1.3e-66

83.02

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Query:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV
        MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA  DDSLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPV
Subjt:  MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV
        L+RL+RSGL+PRV TLQDQVQRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.4e-11

39.83

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Query:  DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPS--SLRPLVLALGGYKRLYLLCLRPVLTR-----LSRSGLLPRVWTLQDQV
        D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR +VL+LGG++RL+ + +RP+  R       +    P V   +DQV
Subjt:  DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPS--SLRPLVLALGGYKRLYLLCLRPVLTR-----LSRSGLLPRVWTLQDQV

Query:  QRLSLSLFCVDYYERNDC
        Q LSLSLF + +++   C
Subjt:  QRLSLSLFCVDYYERNDC

Q9LUB6 F-box protein SNE

3.7e-34

56.13

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Query:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLS
        E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A  +DS+WE LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R  
Subjt:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLS

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   +G  L  A P SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV

Q9STX3 F-box protein GID2

4.9e-10

34.81

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Query:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV
        D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ LWE +C RH ++     + LR +VLALGG++RL+ L L P 
Subjt:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
           LS+    PR    +D++ +L+LSL  + YYE+
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

3.5e-11

34.81

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Query:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV
        D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ LWE +C RH ++     + LR +VLALGG++RL+ L L P 
Subjt:  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPV

Query:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
           LS+    PR    +D++ +L+LSL  + YYE+
Subjt:  LTRLSRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

AT5G48170.1 F-box family protein

2.6e-35

56.13

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Query:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLS
        E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A  +DS+WE LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R  
Subjt:  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLS

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   +G  L  A P SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV

Sequences

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CDS sequence

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ATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAG
CGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCATCGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCAC
CTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAGT
CGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGC
GGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAA

mRNA sequence

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Protein sequence

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MMQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASIDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLS
RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

ClCG02G002810 (gene) of Watermelon (Charleston Gray) v2.5 genome