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ClCG02G006060 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G006060
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Genome locationCG_Chr02:6716624..6717652
RNA-Seq ExpressionClCG02G006060
SyntenyClCG02G006060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036141.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.6e-0458.93Show/hide
Query:  FQSTRKGSLKMNDYLRIMKNHADNLEQAENPATS--RALSESLLYEKRLEHQNTHK
        FQ+TRKG+ KM DYLRIMK + +NL Q E P  S     SE L++EKRLEHQN++K
Subjt:  FQSTRKGSLKMNDYLRIMKNHADNLEQAENPATS--RALSESLLYEKRLEHQNTHK

KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]1.7e-0638.06Show/hide
Query:  QVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN-GLFGGSTSVNV
        Q FQ+TRKG+  M DYLRIMK +ADNL QAE+P   RAL                               S+ L++EKRL+HQN+ KN G    + ++N+
Subjt:  QVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN-GLFGGSTSVNV

Query:  ATSKGSNNGGPRQFAPNQV--GNQNNRRPQFSGS
        A S+  NN  PR    +Q    N+NN +    GS
Subjt:  ATSKGSNNGGPRQFAPNQV--GNQNNRRPQFSGS

XP_038896600.1 uncharacterized protein LOC120084860 [Benincasa hispida]7.2e-0537.1Show/hide
Query:  GASSNASVSEVTTQVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHK
        G  S A   +   Q+FQ TRKG  KM+ YL++MK H+DNL Q  +P ++R L                               SE L YEKRLEHQN+ K
Subjt:  GASSNASVSEVTTQVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHK

Query:  -NGLFGGSTSVNVATSKGSNNGGP
         +  F     VNVA S   N G P
Subjt:  -NGLFGGSTSVNVATSKGSNNGGP

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]2.5e-0543.68Show/hide
Query:  VFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN
        VFQ+TRKG+LKM DYLR MK + DNLEQA +P   RAL                               S+ LLYE+RLEHQ+  KN
Subjt:  VFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein8.3e-0738.06Show/hide
Query:  QVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN-GLFGGSTSVNV
        Q FQ+TRKG+  M DYLRIMK +ADNL QAE+P   RAL                               S+ L++EKRL+HQN+ KN G    + ++N+
Subjt:  QVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRAL-------------------------------SESLLYEKRLEHQNTHKN-GLFGGSTSVNV

Query:  ATSKGSNNGGPRQFAPNQV--GNQNNRRPQFSGS
        A S+  NN  PR    +Q    N+NN +    GS
Subjt:  ATSKGSNNGGPRQFAPNQV--GNQNNRRPQFSGS

A0A5D3CPY2 Retrotransposon protein, putative, Ty1-copia subclass7.8e-0558.93Show/hide
Query:  FQSTRKGSLKMNDYLRIMKNHADNLEQAENPATS--RALSESLLYEKRLEHQNTHK
        FQ+TRKG+ KM DYLRIMK + +NL Q E P  S     SE L++EKRLEHQN++K
Subjt:  FQSTRKGSLKMNDYLRIMKNHADNLEQAENPATS--RALSESLLYEKRLEHQNTHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTGCAACCAGAAGTTGTCATTCCTCAACCCATAACTTCGATGGTACCCACTCACGTCTCTGCTTCGACTCAAGGAGTCTCCGCGTCAGAAGGAGTCTCCACAGG
CGCAAGCAGCAATGCCAGTGTGTCAGAAGTTACTACACAAGTATTTCAGTCCACTCGAAAAGGCTCCTTGAAAATGAATGATTATTTGCGTATTATGAAAAATCATGCAG
ACAATTTAGAACAAGCTGAAAACCCAGCTACCTCTCGTGCCTTGTCTGAGTCGCTGCTTTATGAAAAACGACTTGAACATCAAAACACCCATAAGAATGGGTTATTTGGA
GGATCCACGTCTGTCAACGTAGCCACAAGTAAAGGGTCGAACAATGGAGGTCCAAGGCAGTTTGCTCCAAATCAAGTTGGAAATCAGAACAATCGACGACCACAGTTTTC
TGGAAGTTTTCCTATAAATCAGAATACAATCTCTTCGATTCAGCCTTCAAATCAGGCTTTCGTGGCAGCTCATAATTCAAATCCGTTTGTGTCAAGTCCTGAGTCTAGTA
TTGGTCCAAATGGTATATGGACAGCGGTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCTGCAACCAGAAGTTGTCATTCCTCAACCCATAACTTCGATGGTACCCACTCACGTCTCTGCTTCGACTCAAGGAGTCTCCGCGTCAGAAGGAGTCTCCACAGG
CGCAAGCAGCAATGCCAGTGTGTCAGAAGTTACTACACAAGTATTTCAGTCCACTCGAAAAGGCTCCTTGAAAATGAATGATTATTTGCGTATTATGAAAAATCATGCAG
ACAATTTAGAACAAGCTGAAAACCCAGCTACCTCTCGTGCCTTGTCTGAGTCGCTGCTTTATGAAAAACGACTTGAACATCAAAACACCCATAAGAATGGGTTATTTGGA
GGATCCACGTCTGTCAACGTAGCCACAAGTAAAGGGTCGAACAATGGAGGTCCAAGGCAGTTTGCTCCAAATCAAGTTGGAAATCAGAACAATCGACGACCACAGTTTTC
TGGAAGTTTTCCTATAAATCAGAATACAATCTCTTCGATTCAGCCTTCAAATCAGGCTTTCGTGGCAGCTCATAATTCAAATCCGTTTGTGTCAAGTCCTGAGTCTAGTA
TTGGTCCAAATGGTATATGGACAGCGGTGCTTTGA
Protein sequenceShow/hide protein sequence
MLLQPEVVIPQPITSMVPTHVSASTQGVSASEGVSTGASSNASVSEVTTQVFQSTRKGSLKMNDYLRIMKNHADNLEQAENPATSRALSESLLYEKRLEHQNTHKNGLFG
GSTSVNVATSKGSNNGGPRQFAPNQVGNQNNRRPQFSGSFPINQNTISSIQPSNQAFVAAHNSNPFVSSPESSIGPNGIWTAVL