CuGenDBv2

Gene ID	ClCG02G006840
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	30S ribosomal protein S2, chloroplastic
Genome location	CG_Chr02:7915551..7917462
RNA-Seq Expression	ClCG02G006840
Synteny	ClCG02G006840
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BBN69347.1 hypothetical protein Prudu_897S000100 [Prunus dulcis]

3.2e-21

81.82

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK  CDLVFDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_009236269.1 ribosomal protein S2 [Gynostemma pentaphyllum]

2.7e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_009752739.1 ribosomal protein S2 [Cyclantheropsis parviflora]

2.1e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_010018023.1 ribosomal protein S2 [Primula saxatilis]

2.7e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_010119723.1 ribosomal protein S2 [Hemsleya zhejiangensis]

2.7e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

TrEMBL top hits

e value

%identity

Alignment

A0A109WWM8 30S ribosomal protein S2, chloroplastic

1.3e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A5H2XMN2 Uncharacterized protein

1.5e-21

81.82

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK  CDLVFDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A6G7GDS5 30S ribosomal protein S2, chloroplastic

1.3e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A6H0ERY3 30S ribosomal protein S2, chloroplastic

1.3e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A6H0EV20 30S ribosomal protein S2, chloroplastic

1.0e-20

67.47

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

SwissProt top hits

e value

%identity

Alignment

B1A924 30S ribosomal protein S2, chloroplastic

1.7e-22

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

P08242 30S ribosomal protein S2, chloroplastic

3.0e-22

65.06

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDLVFDA+SRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q0ZJ31 30S ribosomal protein S2, chloroplastic

3.9e-22

65.06

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q49L09 30S ribosomal protein S2, chloroplastic

1.7e-22

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q4VZP4 30S ribosomal protein S2, chloroplastic

2.3e-22

65.06

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAA+RGKQFLIVGTKNK  DSVARAATR +CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

5.2e-22

62.65

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MM A V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFLIVGTKNK  D V+RAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Sequences

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CDS sequence

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ATGATGGAAGCAAGAGTTCGTCTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGACATCTTATATCTCTGCAAAACCTTGTGATTTAGTTTTTGATGCAGCAAGTAG
GGGCAAACAATTCTTAATTGTTGGTACAAAAAATAAAGTAGTGGATTCAGTAGCTCGTGCTGCAACAAGGGCTCAGTGTCATTATAACTACGATACGAGACGGGTCCTTG
TTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGACTGTCGGTACCACTTACCTTAACCATTCAGTCATGGATGCTTAGCGAGGATCTT
CGTACTTGA

mRNA sequence

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Protein sequence

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MMEARVRLGHGTRKWNPRMTSYISAKPCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHYNYDTRRVLVGSDAPITTAYWKRLPIRRLSVPLTLTIQSWMLSEDL
RT

ClCG02G006840 (gene) of Watermelon (Charleston Gray) v2.5 genome