CuGenDBv2

Gene ID	ClCG02G007563
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem II CP47 reaction center protein
Genome location	CG_Chr02:8941426..8942850
RNA-Seq Expression	ClCG02G007563
Synteny	ClCG02G007563
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADM63359.1 photosystem II cp47 protein, partial [Scaevola auriculata]

1.3e-34

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

ALO21850.1 PsbB [Cucurbita argyrosperma subsp. sororia]

1.3e-34

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

PHT24622.1 Photosystem II CP47 reaction center protein [Capsicum baccatum]

1.3e-34

98.63

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DR+TLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

YP_009751679.1 photosystem II 47 kDa protein [Hodgsonia heteroclita]

1.3e-34

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

YP_009751764.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum]

1.3e-34

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE33 Photosystem II CP47 reaction center protein

6.2e-35

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

A0A1S4EU40 Photosystem II CP47 reaction center protein

6.2e-35

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

A0A249RZY7 Photosystem II CP47 reaction center protein

6.2e-35

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

A0A2Z2CGC0 Photosystem II CP47 reaction center protein

6.2e-35

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

G3ETS3 Photosystem II CP47 reaction center protein

6.2e-35

98.65

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

SwissProt top hits

e value

%identity

Alignment

A4QJE1 Photosystem II CP47 reaction center protein

6.4e-37

98.63

Show/hide

Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

A4QJM5 Photosystem II CP47 reaction center protein

6.4e-37

98.63

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

A4QK44 Photosystem II CP47 reaction center protein

6.4e-37

98.63

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

P56777 Photosystem II CP47 reaction center protein

6.4e-37

98.63

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

Q2QD63 Photosystem II CP47 reaction center protein

4.9e-37

97.3

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Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLD QVEFGAFQKLGDPTTKRV
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

4.5e-38

98.63

Show/hide

Query:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        DRATLK DGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  DRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

Sequences

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CDS sequence

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ATGATCAGTGTTCACAAGAGCAAGACGGTTCAATGTCTTACAATGTTAAAGCAGCCAGCATTCTTGTCGGAAGGATTTTTTAGGAGGCCCGGACACCTACCGAACATCCC
TGAAGGATGGAACAACATGATGAAGAAGCCACAAAGAAAGAAGAGGGAAGATCGTGCTACTTTGAAATTCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTT
TTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAA
GTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

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Protein sequence

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MISVHKSKTVQCLTMLKQPAFLSEGFFRRPGHLPNIPEGWNNMMKKPQRKKREDRATLKFDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQ
VEFGAFQKLGDPTTKRV

ClCG02G007563 (gene) of Watermelon (Charleston Gray) v2.5 genome